HobnobMancer / cazy_webscraper
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
☆14Updated 4 months ago
Alternatives and similar repositories for cazy_webscraper
Users that are interested in cazy_webscraper are comparing it to the libraries listed below
Sorting:
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 3 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆50Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆36Updated 8 months ago
- UniProt Id Mapping through API☆31Updated 7 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆55Updated 9 months ago
- Pipeline for major biological analyses.☆34Updated 3 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- ☆38Updated 2 weeks ago
- Supplementary data for co-occurrence manuscript☆10Updated 5 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆81Updated 5 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated last month
- antimicrobial peptide prediction in R☆30Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆46Updated last year
- A Pure-Python parser of HMMER3 output☆17Updated 7 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated this week
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆61Updated 5 months ago
- ☆19Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 weeks ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆79Updated last month
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 2 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 2 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆48Updated 8 months ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated last week
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆21Updated 2 years ago