Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
☆18Jan 7, 2026Updated 5 months ago
Alternatives and similar repositories for cazy_webscraper
Users that are interested in cazy_webscraper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆18Nov 23, 2020Updated 5 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- ☆31Oct 10, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- DIAMOND online documentation☆10Sep 2, 2020Updated 5 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- Desktop tool for microbial genome annotation and gene detection☆13Jun 22, 2021Updated 4 years ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆38Updated this week
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆27Mar 16, 2026Updated 2 months ago
- ☆13Oct 9, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- QGIS svg icons - Animal silhouettes☆13Nov 17, 2018Updated 7 years ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆26May 2, 2026Updated last month
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- ☆19Aug 29, 2025Updated 9 months ago
- Cloud-based molecular docking for everyone☆12Jul 1, 2024Updated last year
- Machine learning prediction of enzyme optimum pH☆25Apr 29, 2025Updated last year
- 从零构建了Agent中最重要的功能-function call☆18Oct 16, 2024Updated last year
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MiGA: Microbial Genomes Atlas☆33May 26, 2026Updated 2 weeks ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 5 years ago
- Utilities written for bioinformatics☆17Sep 27, 2022Updated 3 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20May 30, 2026Updated 2 weeks ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆166Apr 23, 2025Updated last year
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆31Jan 20, 2026Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 8 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆24Updated this week
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- ☆12Mar 11, 2025Updated last year
- Python bindings for the TaxonKit library☆43Jun 1, 2026Updated last week
- Bioinformatics with R cookbook☆14Apr 3, 2019Updated 7 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago