HobnobMancer / cazy_webscraper
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
☆12Updated last month
Alternatives and similar repositories for cazy_webscraper:
Users that are interested in cazy_webscraper are comparing it to the libraries listed below
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last year
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆41Updated 3 weeks ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆38Updated last month
- UniProt Id Mapping through API☆32Updated 3 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Supplementary data for co-occurrence manuscript☆10Updated 5 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 11 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆18Updated 2 months ago
- ☆38Updated last month
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆17Updated last week
- Discovery of conserved gene clusters in multiple genomes☆58Updated 2 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆77Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆23Updated this week
- Viral protein family functional prediction using protein language models☆18Updated 8 months ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Updated 4 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆65Updated 3 weeks ago
- ☆19Updated 2 years ago
- Detection of phage RBPs based on protein domains and machine learning☆21Updated last year
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆21Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆43Updated 2 months ago
- Python package for building and analyzing models using ModelSEED☆20Updated 2 months ago
- ☆11Updated last month
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated last year
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆53Updated 6 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- Biological sequence clustering tool with dynamic threshold☆24Updated last year