Alternatives and similar repositories for Yu2021NaturePlants

Users that are interested in Yu2021NaturePlants are comparing it to the libraries listed below

• GRONINGEN-MICROBIOME-CENTRE / DMP
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆34Updated 4 years ago
• ShawnWx2019 / MetMiner
  MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
  ☆17Updated 10 months ago
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆20Updated 3 years ago
• Asa12138 / pctax
  Professional Comprehensive Omics Data Analysis
  ☆23Updated 3 months ago
• lixiang117423 / qPCRtools
  ☆19Updated last year
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆37Updated 2 years ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆29Updated 7 months ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆35Updated 8 months ago
• dadrasarmin / enrichment_analysis_for_non_model_organism
  In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.
  ☆22Updated 2 years ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆12Updated this week
• nongxinshengxin / RNAdiffAPP
  ☆17Updated last year
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 4 years ago
• YaoLab-Bioinfo / shinyCircos-V2.0
  an R/Shiny application for interactive creation of Circos plot
  ☆49Updated 2 years ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆27Updated 6 years ago
• ZhangRenL / geneHapR
  ☆15Updated last year
• frankgenome / DataColor
  DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping
  ☆15Updated last year
• xuzhougeng / myscripts
  ☆60Updated last year
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 6 months ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 6 years ago
• YongxinLiu / Culturome
  ☆28Updated last year
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• mongiardino / genesortR
  Sorting and subsampling phylogenomic datasets
  ☆25Updated 5 months ago
• Hua-CM / HuaSmallTools
  Some bioinformic domestic scripts.
  ☆34Updated 2 years ago
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆18Updated 4 months ago
• EvaYiwenWang / PLSDAbatch
  Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.
  ☆13Updated last year
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 4 months ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆30Updated 4 years ago
• YuSugihara / QTL-seq
  QTL-seq pipeline to identify causative mutations responsible for a phenotype
  ☆57Updated 7 months ago