PengYuMaize / Yu2021NaturePlants
Scripts for WGCNA network analysis and correlation with microbial taxonomy traits
☆17Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for Yu2021NaturePlants
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆19Updated 2 years ago
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆16Updated 2 weeks ago
- Some bioinformic domestic scripts.☆34Updated last year
- ☆19Updated 5 years ago
- ☆23Updated 10 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆31Updated 3 years ago
- my bin directory☆44Updated 2 weeks ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 11 months ago
- ☆19Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated 3 weeks ago
- tutorial on pggb☆27Updated 10 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆32Updated 2 months ago
- A simple plot library☆51Updated 7 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆25Updated 7 months ago
- I often use some of the self-written programs.☆15Updated 7 months ago
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆25Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last year
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- Codes for the lettuce resequencing project in 2020☆26Updated 3 years ago
- Transcriptomics Visualization R package.☆58Updated 10 months ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 5 years ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- Repository of common bioinformatics scripts☆38Updated 3 years ago
- ☆21Updated 5 years ago
- GWAS analysis process based on EMMAX software☆11Updated 11 months ago
- repository of scripts for comparative transcriptome analysis☆18Updated 5 years ago
- A (very) simple script to QC Hi-C data.☆25Updated last year