PengYuMaize / Yu2021NaturePlantsLinks
Scripts for WGCNA network analysis and correlation with microbial taxonomy traits
☆19Updated 4 years ago
Alternatives and similar repositories for Yu2021NaturePlants
Users that are interested in Yu2021NaturePlants are comparing it to the libraries listed below
Sorting:
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- ☆20Updated 5 years ago
- Perform GWAS with gemma in a simple pipeline☆26Updated last month
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 6 years ago
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆16Updated 7 months ago
- tutorial on pggb☆34Updated 4 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 3 months ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated 9 months ago
- ☆19Updated last year
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆18Updated 7 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆12Updated 8 months ago
- Professional Comprehensive Omics Data Analysis☆19Updated 6 months ago
- ☆21Updated 6 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 2 months ago
- Some NGS workflow created by snakemake☆13Updated 4 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 3 weeks ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆36Updated 2 months ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- ☆14Updated 4 years ago
- ☆17Updated last year
- Some bioinformic domestic scripts.☆34Updated 2 years ago
- Pipeline for transcriptome de novo assembly☆12Updated 7 years ago
- Analysis of transposable elements☆10Updated last week
- GO KEGG annotation☆36Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆23Updated 6 months ago