Alternatives and similar repositories for thumbnailpolish

Users that are interested in thumbnailpolish are comparing it to the libraries listed below

• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• GenomiqueENS / aozan
  An automated post sequencing data processing pipeline for Illumina HiSeq
  ☆14Updated last month
• sequencing / gvcftools
  Utilities to create and analyze gVCF files
  ☆38Updated 8 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• rhshah / iCallSV
  A Framework to call Structural Variants from NGS based datasets
  ☆22Updated 7 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• xuchang116 / smCounter
  smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…
  ☆20Updated 6 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆51Updated 7 months ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• JohnUrban / poreminion
  Additional tools for analyzing Oxford Nanopore minION data
  ☆17Updated 9 years ago
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆32Updated 4 years ago
• PacificBiosciences / minorseq
  Minor Variant Calling and Phasing Tools
  ☆15Updated 3 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆56Updated 8 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 5 months ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 7 months ago
• tszalay / poreseq
  Error correction and variant calling algorithm for nanopore sequencing
  ☆26Updated 9 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 4 years ago
• ukhsa-collaboration / PHEnix
  Public Health England SNP calling pipeline.
  ☆36Updated 6 years ago
• robinandeer / puzzle
  Variant caller GUI + genetic disease analysis
  ☆22Updated 5 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 7 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆63Updated 7 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆48Updated 4 years ago
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆52Updated 4 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• mills-lab / svelter
  Approach to identify simple and complex structural genomic rearrangements using a randomized approach
  ☆21Updated 6 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 7 years ago
• scottgigante / picopore
  A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
  ☆31Updated last year
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 6 years ago