wltrimbl / thumbnailpolishLinks
Scripts to visualize the thumbnail images from illumina sequencing machines
☆14Updated 9 years ago
Alternatives and similar repositories for thumbnailpolish
Users that are interested in thumbnailpolish are comparing it to the libraries listed below
Sorting:
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Updated 4 months ago
- full taxonomer cython repository☆22Updated 6 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last month
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Browser based application for viewing bam alignments☆56Updated 9 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 7 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- A Python library for reading and writing PacBio® data files☆41Updated 3 weeks ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago