EngqvistLab / Tome
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
☆55Updated 4 years ago
Alternatives and similar repositories for Tome:
Users that are interested in Tome are comparing it to the libraries listed below
- Python framework for doing ancestral sequence reconstruction☆37Updated 6 months ago
- snakemake pipeline for creating trees from sequence sets☆70Updated last week
- a pipeline to build similarity maps of protein space☆30Updated last month
- ☆11Updated last month
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last year
- Discovery of conserved gene clusters in multiple genomes☆57Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆108Updated last month
- Feature map and function annotation of Proteins☆30Updated 7 months ago
- UniProt Id Mapping through API☆32Updated 3 months ago
- ☆25Updated 7 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆99Updated 4 months ago
- DeepECtransformer☆23Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆33Updated last week
- Code for LazyAF pipeline☆21Updated 11 months ago
- Transmembrane proteins predicted through Language Model embeddings☆32Updated 10 months ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆18Updated 6 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆79Updated 9 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆12Updated 3 weeks ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆50Updated last month
- Multiple Protein Structure Alignment at Scale with FoldMason☆147Updated this week
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆38Updated 3 months ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated 11 months ago
- ColabFold protocol☆48Updated 3 months ago
- A domain parser for Alphafold models☆32Updated last year
- ☆33Updated 3 months ago
- Protein structure alignment and search algorithm☆49Updated this week
- Detection of remote homology by comparison of protein language model representations☆47Updated last month
- Software for predicting translation initiation rates in bacteria☆19Updated last month
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 5 months ago