Alternatives and similar repositories for Tome

Users that are interested in Tome are comparing it to the libraries listed below

• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 3 months ago
• Merck / bgc-pipeline
  ☆11Updated 9 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆37Updated 9 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆153Updated last year
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated 11 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆186Updated this week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆151Updated 9 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated last month
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated last week
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆54Updated 4 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• tlawrence3 / amPEPpy
  ☆27Updated last year
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 5 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆70Updated this week
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 2 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 9 months ago
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆14Updated 3 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated last month
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated last week
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆22Updated 4 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated 2 years ago