A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
☆65Sep 30, 2020Updated 5 years ago
Alternatives and similar repositories for Tome
Users that are interested in Tome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated last year
- ☆28May 24, 2024Updated last year
- ☆38Jun 20, 2022Updated 3 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated last month
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆189Jul 4, 2023Updated 2 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Machine learning prediction of enzyme optimum pH☆50Apr 29, 2025Updated 11 months ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 4 years ago
- Horizontal gene transfer (HGT) identification pipeline☆71May 17, 2023Updated 2 years ago
- DeepECtransformer☆29Oct 20, 2023Updated 2 years ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆44Feb 11, 2023Updated 3 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆35Apr 2, 2026Updated last week
- Multi-class signal peptide prediction and structure decoding model.☆105Feb 4, 2025Updated last year
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- ☆23Mar 2, 2019Updated 7 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 4 months ago
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated last year
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.☆15Feb 18, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆161Apr 23, 2025Updated 11 months ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆53May 14, 2025Updated 10 months ago
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 4 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆163Feb 13, 2026Updated last month
- Infers a phylogenetic tree from protein structures☆102Mar 3, 2026Updated last month
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Jun 28, 2021Updated 4 years ago
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆27Dec 17, 2023Updated 2 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆266Jan 31, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Find clustered hits from a BLAST search☆136Jan 16, 2026Updated 2 months ago
- BGC Detection and Classification Using Deep Learning☆155Nov 11, 2023Updated 2 years ago
- S2F: protein function without experiments☆16Nov 24, 2025Updated 4 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆38Mar 13, 2026Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆333Nov 10, 2025Updated 5 months ago
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 5 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆23Apr 20, 2025Updated 11 months ago