DaehwanKimLab / hisatLinks
Fast spliced aligner with low memory requirements
☆41Updated 10 years ago
Alternatives and similar repositories for hisat
Users that are interested in hisat are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- ☆78Updated 11 years ago
- ☆96Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- ☆55Updated 5 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated this week
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- Fast fusion detection using kallisto☆79Updated 5 months ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 8 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago