MikkelSchubert / adapterremovalLinks
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
☆113Updated last week
Alternatives and similar repositories for adapterremoval
Users that are interested in adapterremoval are comparing it to the libraries listed below
Sorting:
- ☆123Updated last month
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 8 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆73Updated 3 years ago
- Python programs for processing GFF3 files☆99Updated last year
- BAM Statistics, Feature Counting and Annotation☆149Updated this week
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆112Updated last year
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- ☆95Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆103Updated 3 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- reference-free transcriptome assembly for short and long reads☆109Updated last year
- ABRA2☆92Updated 2 years ago
- Hierarchical Alignment Format☆171Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- VCF-kit: Assorted utilities for the variant call format☆130Updated 2 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆106Updated 2 months ago
- ☆79Updated 4 years ago
- Quality control tools for nanopore sequencing data☆110Updated 10 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆102Updated last month
- ☆91Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 weeks ago