NBISweden / workshop-spatialLinks
☆16Updated 2 years ago
Alternatives and similar repositories for workshop-spatial
Users that are interested in workshop-spatial are comparing it to the libraries listed below
Sorting:
- A docker image for single-cell analysis☆103Updated 2 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆84Updated 10 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆58Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆29Updated 3 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆85Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆58Updated 7 months ago
- trajectory inference☆105Updated 11 months ago
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆95Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated last month
- Spatial transcriptomics of heart tissue☆106Updated 2 years ago
- ☆48Updated 2 months ago
- ☆56Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆82Updated 3 years ago
- ☆66Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- ☆14Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 11 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated last week
- ☆19Updated 3 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- ☆36Updated 2 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago