☆16Oct 2, 2023Updated 2 years ago
Alternatives and similar repositories for workshop-spatial
Users that are interested in workshop-spatial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to transform images into valuable analysis items☆18Jun 18, 2025Updated 9 months ago
- Notebooks in computational metabolomics☆15Feb 3, 2025Updated last year
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- ☆13Dec 20, 2025Updated 3 months ago
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated 5 months ago
- ☆12Feb 26, 2026Updated 3 weeks ago
- single RNA-seq analysis of human keloid samples☆12May 25, 2021Updated 4 years ago
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Jul 26, 2024Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- ☆17Mar 6, 2024Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 3 months ago
- Source codes and examples for DeepPrime☆13Dec 17, 2024Updated last year
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆31May 1, 2025Updated 10 months ago
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated last year
- a guideRNA database generation tool☆18Mar 3, 2025Updated last year
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆27Oct 29, 2019Updated 6 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆37Apr 30, 2025Updated 10 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆21Jul 13, 2023Updated 2 years ago
- This repository will host a (continously updated) list of various deep learning methods used in different stages of spatial transcriptomi…☆44Feb 9, 2023Updated 3 years ago
- dsNickFury is for comparing a CRISPR target site against all other potential sites in a genome. Orchid is a package I'm developing to go…☆13Mar 26, 2018Updated 7 years ago
- ☆13Aug 9, 2022Updated 3 years ago
- off-targeting assessment of Cas9 gRNAs☆15Apr 27, 2021Updated 4 years ago
- Visualization tool for temporal clonal evolution.☆18Mar 13, 2020Updated 6 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Oct 23, 2024Updated last year
- Image augmentation library in Python for machine learning.☆13Mar 9, 2020Updated 6 years ago
- ☆14Oct 24, 2025Updated 4 months ago
- ☆30Jan 17, 2026Updated 2 months ago
- ☆35Dec 22, 2024Updated last year
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆30Nov 21, 2025Updated 4 months ago
- Contains hands-on example code for [O'reilly book "Deep Learning At Scale"](https://www.oreilly.com/library/view/deep-learning-at/9781098…☆31Jun 15, 2024Updated last year
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- ☆13Feb 12, 2026Updated last month
- ☆38Oct 24, 2025Updated 4 months ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- ☆13Sep 29, 2023Updated 2 years ago
- Repo for my course PSY6135: Psychology of Data Visualization☆12May 3, 2025Updated 10 months ago