☆49Apr 8, 2025Updated last year
Alternatives and similar repositories for ELIXIR-SCO-spatial-omics
Users that are interested in ELIXIR-SCO-spatial-omics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to transform images into valuable analysis items☆19Jun 19, 2026Updated 2 weeks ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 9 months ago
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆83Updated this week
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆54Aug 11, 2025Updated 10 months ago
- List of Spatial Transcriptomics related Tools organized per category☆184Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Apr 16, 2025Updated last year
- ☆102May 4, 2026Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- ☆30Jul 2, 2026Updated last week
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆82Feb 10, 2026Updated 4 months ago
- A public MuSpAn page for community discussions and issue reporting.☆22Jun 17, 2026Updated 3 weeks ago
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆39Jun 26, 2026Updated last week
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- ☆38Dec 13, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Calling disease-related genes☆17Apr 1, 2026Updated 3 months ago
- ☆34May 31, 2026Updated last month
- ☆70Updated this week
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆12Apr 19, 2023Updated 3 years ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆26Updated this week
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 9 months ago
- ☆15May 7, 2024Updated 2 years ago
- Learning notes for DBiT-Notes☆11Nov 28, 2024Updated last year
- ☆23Mar 29, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆31Mar 18, 2022Updated 4 years ago
- Framework for multi-omics data integration by autoencoders☆32Jan 20, 2026Updated 5 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆46Updated this week
- 基于FPGA实现的流水灯项目☆10Mar 19, 2018Updated 8 years ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆14May 18, 2024Updated 2 years ago
- ☆49Jun 3, 2026Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 7 months ago
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆17Nov 13, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆59Jan 29, 2026Updated 5 months ago
- tools and notes for spatial omics☆366Feb 26, 2025Updated last year
- ☆33Jan 3, 2025Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- ☆17Sep 13, 2024Updated last year