deepimagej / deepimagej-plugin
The ImageJ plugin to run deep-learning models
☆91Updated this week
Alternatives and similar repositories for deepimagej-plugin:
Users that are interested in deepimagej-plugin are comparing it to the libraries listed below
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆64Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆55Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- Cookiecutter for napari plugins☆69Updated 4 months ago
- GPU-accelerated image processing for everyone☆51Updated 8 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆75Updated last week
- StarDist plugin for napari☆37Updated 6 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- A python algorithm for tracking cells in 3D time lapse images.☆56Updated 2 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Updated this week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆149Updated this week
- ImgLib2/BDV implementation of Stitching for large datasets☆72Updated 3 weeks ago
- Open source Python library for building bioimage analysis pipelines☆137Updated this week
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- The Java library to run Deep Learning models☆29Updated this week
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- ☆35Updated this week
- Lectures for a napari training course☆50Updated last year
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆72Updated last month
- ☆38Updated 7 months ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆55Updated this week
- A platform for compiling, analyzing, and exploring tracking data☆43Updated this week
- ☆68Updated 3 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆78Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆132Updated 3 weeks ago