Alternatives and similar repositories for ZeroCostDL4Mic:

Users that are interested in ZeroCostDL4Mic are comparing it to the libraries listed below

• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆217Updated 4 months ago
• stardist / stardist
  StarDist - Object Detection with Star-convex Shapes
  ☆979Updated 4 months ago
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆420Updated this week
• CSBDeep / CSBDeep
  Image restoration for fluorescence microscopy
  ☆294Updated 4 months ago
• MouseLand / cellpose
  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
  ☆1,493Updated last week
• imagej / pyimagej
  Use ImageJ from Python
  ☆489Updated 3 weeks ago
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆436Updated 5 months ago
• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆201Updated last year
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆145Updated this week
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆130Updated this week
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆133Updated 4 years ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆209Updated last month
• trackmate-sc / TrackMate
  TrackMate is your buddy for your everyday tracking.
  ☆179Updated this week
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆136Updated this week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆74Updated 3 weeks ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆89Updated 3 months ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆107Updated 2 weeks ago
• sartorius-research / LIVECell
  ☆185Updated last year
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 3 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆103Updated this week
• instanseg / instanseg
  ☆139Updated 2 weeks ago
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆131Updated this week
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆67Updated 5 months ago
• AllenCellModeling / pytorch_fnet
  Three dimensional cross-modal image inference
  ☆154Updated 4 years ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆142Updated this week
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆97Updated 2 years ago
• HenriquesLab / DeepBacs
  ☆30Updated 2 years ago
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆136Updated 5 months ago
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆77Updated 2 weeks ago