ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
☆633Dec 8, 2025Updated 3 months ago
Alternatives and similar repositories for ZeroCostDL4Mic
Users that are interested in ZeroCostDL4Mic are comparing it to the libraries listed below
Sorting:
- StarDist - Object Detection with Star-convex Shapes☆1,188Feb 14, 2026Updated last month
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,114Updated this week
- Image restoration for fluorescence microscopy☆327Dec 8, 2025Updated 3 months ago
- Segment Anything for Microscopy☆663Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆154Jan 11, 2026Updated 2 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆90Mar 3, 2026Updated 2 weeks ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 11 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆85Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Apr 9, 2020Updated 5 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- A platform for compiling, analyzing, and exploring tracking data☆49Feb 2, 2026Updated last month
- Cell tracking and segmentation software☆174Updated this week
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 8 months ago
- ☆32Nov 11, 2025Updated 4 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 4 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆80Dec 16, 2024Updated last year
- The ImageJ plugin to run deep-learning models☆97Oct 28, 2025Updated 4 months ago
- ☆15Jul 29, 2022Updated 3 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆119Mar 9, 2026Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- Deep Learning Library for Single Cell Analysis☆475Aug 30, 2024Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Feb 17, 2023Updated 3 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆234Sep 11, 2023Updated 2 years ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆242Feb 21, 2025Updated last year
- An open-source application for biological image analysis☆1,095Updated this week
- ☆41Mar 12, 2026Updated last week
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆177Mar 14, 2026Updated last week
- Transformer-based cell tracking for live-cell microscopy☆125Feb 1, 2026Updated last month
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Jan 17, 2026Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆117Mar 13, 2026Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Mar 2, 2026Updated 2 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 3 months ago
- napari: a fast, interactive, multi-dimensional image viewer for python☆2,609Updated this week
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Oct 10, 2022Updated 3 years ago