HenriquesLab / NanoPyxLinks
Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
☆89Updated 2 weeks ago
Alternatives and similar repositories for NanoPyx
Users that are interested in NanoPyx are comparing it to the libraries listed below
Sorting:
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated this week
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- ☆36Updated last year
- ☆51Updated 9 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- ☆91Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 9 months ago
- ☆22Updated 7 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- Lectures for a napari training course☆50Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- StarDist plugin for napari☆38Updated last year
- Automated mitochondrial segmentation and tracking.☆33Updated 4 years ago
- A template repo used to make new napari plugins☆31Updated this week
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Cookiecutter for napari plugins☆71Updated last year
- Browse your OMERO database from within napari.☆40Updated 3 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week