Alternatives and similar repositories for NanoPyx:

Users that are interested in NanoPyx are comparing it to the libraries listed below

• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated last week
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆68Updated this week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆75Updated last week
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated 2 months ago
• haesleinhuepf / devbio-napari
  ☆47Updated 4 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 6 months ago
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆45Updated this week
• BiAPoL / PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
  PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
  ☆25Updated 9 months ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆36Updated this week
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated 3 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆55Updated 3 weeks ago
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆31Updated 3 years ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆41Updated 4 months ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 5 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆43Updated this week
• peng-lab / BaSiCPy
  ☆68Updated 3 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆49Updated last week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 weeks ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 3 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 4 months ago
• adanog / MSSR
  MSSR Plugin
  ☆13Updated 4 months ago
• NEUBIAS / Defragmentation_TS2_EOSC-Life_2023
  "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…
  ☆10Updated last year
• abcucberkeley / PetaKit5D
  ☆38Updated this week
• LaboratoryOpticsBiosciences / FLUTE
  Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data
  ☆27Updated 3 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 4 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆77Updated this week
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆36Updated 2 weeks ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆63Updated last week
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago