HenriquesLab / NanoPyxLinks
Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
☆85Updated this week
Alternatives and similar repositories for NanoPyx
Users that are interested in NanoPyx are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated this week
- ☆51Updated 4 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- ☆32Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- ☆87Updated 5 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆100Updated last week
- StarDist plugin for napari☆39Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl …☆33Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆78Updated 5 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 4 months ago
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- Cell tracking and segmentation software☆138Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆99Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 4 months ago
- Transformer-based cell tracking for live-cell microscopy☆90Updated 3 weeks ago
- Lectures for a napari training course☆50Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 6 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Automated mitochondrial segmentation and tracking.☆32Updated 4 years ago
- ☆24Updated 2 years ago