campaslab / napari-stressLinks
Interactive surface analysis in napari for bio-mechanical stress measurement
☆18Updated this week
Alternatives and similar repositories for napari-stress
Users that are interested in napari-stress are comparing it to the libraries listed below
Sorting:
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 7 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Updated 11 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- A platform for compiling, analyzing, and exploring tracking data☆45Updated 4 months ago
- ☆29Updated 5 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆38Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- A tutorial of classical shape analysis methods☆11Updated last year
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 9 months ago
- ☆51Updated 2 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- Command-line client for Fractal☆46Updated last week
- QuPath extension for Cellsparse☆19Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- MethodsJ2☆14Updated 3 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 3 weeks ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 7 months ago
- ☆30Updated last year
- 4D reconstruction of developmental trajectories using spherical harmonics☆22Updated 3 months ago