royerlab / dexpLinks
Dataset EXploration & Processing
☆32Updated 2 years ago
Alternatives and similar repositories for dexp
Users that are interested in dexp are comparing it to the libraries listed below
Sorting:
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆65Updated last week
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated 2 months ago
- Process images using SimpleITK in napari☆21Updated 2 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- ☆22Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 10 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- ☆44Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- A napari plugin for making animations☆84Updated 10 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 2 months ago
- A napari plugin to analysis point spread functions.☆13Updated 3 months ago
- python tools for BigDataViewer☆22Updated 6 months ago
- A 3D interactivity toolbox for napari☆37Updated last week
- Optimize image processing workflows in napari☆18Updated 2 months ago
- ☆12Updated last year
- A self-supervised denoising algorithm.☆26Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- dask empowered fast4dreg☆11Updated 7 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- 1d plotting in napari-based canvas.☆26Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last week