Dataset EXploration & Processing
☆33May 11, 2023Updated 2 years ago
Alternatives and similar repositories for dexp
Users that are interested in dexp are comparing it to the libraries listed below
Sorting:
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- dask empowered fast4dreg☆15Mar 11, 2026Updated last week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- ☆13Apr 27, 2020Updated 5 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆31Sep 14, 2024Updated last year
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- ☆23Mar 26, 2021Updated 4 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 8 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 11 months ago
- Python image segmentation plugin☆31Jan 13, 2021Updated 5 years ago
- A collection of 3D image processing functions and applications with GPU implementation☆14Feb 26, 2021Updated 5 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- ilastik plugin for napari☆14Mar 2, 2026Updated 2 weeks ago
- A package for processing diSPIM images with GPU implementation☆14Dec 10, 2021Updated 4 years ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 9 months ago
- A convex 3D deconvolution algorithm for low photon count fluorescence imaging☆33Feb 9, 2022Updated 4 years ago
- Web Image Processing Pipeline (WIPP)☆26Dec 19, 2025Updated 3 months ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 5 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- An image processing package for removing streaks from SPIM images☆42May 14, 2024Updated last year
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Mar 5, 2026Updated 2 weeks ago
- Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python☆31Jul 13, 2021Updated 4 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- The python-microscopy environment - an open-source package for light microscopy☆97Mar 6, 2026Updated 2 weeks ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated 2 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 3 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 10 months ago