☆17Jul 30, 2024Updated last year
Alternatives and similar repositories for AFT-Alignment_by_Fourier_Transform
Users that are interested in AFT-Alignment_by_Fourier_Transform are comparing it to the libraries listed below
Sorting:
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 11 months ago
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 3 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Mar 10, 2026Updated last week
- dask empowered fast4dreg☆15Mar 11, 2026Updated last week
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆20Mar 11, 2025Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆49Feb 2, 2026Updated last month
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- 2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy☆25Dec 19, 2023Updated 2 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- List of openly available dataset generated by our lab☆13Jan 9, 2026Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- Rxiv-Maker is a GitHub-native framework that converts markdown into a publication-ready PDF. It automates scientific preprint generation …☆28Mar 2, 2026Updated 2 weeks ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆90Mar 3, 2026Updated 2 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Feb 6, 2020Updated 6 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…☆16Mar 12, 2024Updated 2 years ago
- ☆13Aug 12, 2022Updated 3 years ago
- ☆39Jul 23, 2024Updated last year
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- ☆41Mar 12, 2026Updated last week
- Command-line tools for statistical analysis of shapes, particularly cell shapes from micrographs.☆30Feb 7, 2025Updated last year
- ☆12Jun 29, 2021Updated 4 years ago
- Next generation of SuRVoS☆10Oct 11, 2023Updated 2 years ago
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- StarDist plugin for ImageJ☆30May 9, 2022Updated 3 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 7 months ago
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆81Feb 3, 2026Updated last month
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- Your Personal Assistant in Computational Bioimaging.☆45Mar 28, 2025Updated 11 months ago
- CloudReg☆11Apr 5, 2024Updated last year
- ☆12May 6, 2024Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55May 1, 2025Updated 10 months ago
- Simulates vertex model with an additional motility force☆10Mar 21, 2017Updated 9 years ago
- ☆23May 30, 2025Updated 9 months ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 6 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Analysis tools for SLEAP-based plant root phenotyping.☆13Feb 13, 2026Updated last month