List of openly available dataset generated by our lab
☆15Apr 1, 2026Updated 2 months ago
Alternatives and similar repositories for Datasets
Users that are interested in Datasets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…☆16May 25, 2026Updated last month
- A Board Game to teach co-localization analysis☆15Nov 1, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated 2 months ago
- CNN for segmenting vasculature☆17Apr 9, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Jun 4, 2026Updated 3 weeks ago
- ☆23Apr 1, 2026Updated 2 months ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated last year
- ☆43Jul 23, 2024Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 6 months ago
- python tools for BigDataViewer☆23Dec 29, 2024Updated last year
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆14Nov 4, 2025Updated 7 months ago
- Rxiv-Maker is a GitHub-native framework that converts markdown into a publication-ready PDF. It automates scientific preprint generation …☆33Jun 18, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accurate and efficient spot detection for microscopy data☆131Jun 8, 2026Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Light microscopy simulation in python.☆53Updated this week
- ☆24May 16, 2023Updated 3 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆91Jun 8, 2026Updated 2 weeks ago
- ☆16Nov 10, 2025Updated 7 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31May 28, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A napari plugin to view and edit layer metadata☆13Updated this week
- Biomedical concept relatedness benchmark sampled from electronic health records☆11Jul 14, 2022Updated 3 years ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 7 months ago
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12May 4, 2026Updated last month
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 4 months ago
- Learn fundamentals of scientific computing for biochemistry using Jupyter notebooks in Python☆17Dec 2, 2025Updated 6 months ago
- ☆17Jul 30, 2024Updated last year
- Graphical modelling with time series data using an ODE model☆12Mar 28, 2022Updated 4 years ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Template for creating a new python repository☆13Sep 28, 2025Updated 9 months ago
- ☆25May 30, 2025Updated last year
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated 5 months ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 3 months ago
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated 3 weeks ago
- ☆14May 17, 2024Updated 2 years ago
- Linking napari layers with Matplotlib plots☆45Jun 2, 2026Updated 3 weeks ago