CRG-Barcelona / bwtool
A tool for bigWig files.
☆119Updated 6 years ago
Alternatives and similar repositories for bwtool:
Users that are interested in bwtool are comparing it to the libraries listed below
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆108Updated 2 weeks ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 3 weeks ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆122Updated 4 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆154Updated 3 months ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- ☆66Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 3 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆60Updated 5 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Tools for working with BUS files☆93Updated 4 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- ☆116Updated last year
- Allele-specific alignment sorting☆54Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- Links to ATAC-seq analysis tools☆60Updated 3 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆128Updated 7 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- ☆82Updated last month
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- Transcript quantification import for modular pipelines☆137Updated 10 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆123Updated 6 months ago
- ☆30Updated 6 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago