CRG-Barcelona / bwtool
A tool for bigWig files.
☆119Updated 6 years ago
Alternatives and similar repositories for bwtool:
Users that are interested in bwtool are comparing it to the libraries listed below
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated 2 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated last month
- ☆67Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆110Updated last month
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆83Updated 2 months ago
- Links to ATAC-seq analysis tools☆60Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆154Updated 4 months ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆53Updated 10 months ago
- Tools for working with BUS files☆94Updated 4 months ago
- Analysis pipeline for the GUIDE-seq assay.☆76Updated last year
- Tip and tricks for BAM files☆84Updated 6 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆60Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆75Updated 6 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago