dpryan79 / ChromosomeMappingsLinks
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
☆242Updated 2 years ago
Alternatives and similar repositories for ChromosomeMappings
Users that are interested in ChromosomeMappings are comparing it to the libraries listed below
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 11 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- Application for making ENCODE Blacklists☆313Updated 4 years ago
- parallel fastq-dump wrapper☆297Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆269Updated last year
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆205Updated 3 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆242Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated last year
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆387Updated 6 months ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆227Updated this week
- Web application to explore the Sequence Read Archive.☆218Updated 2 months ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆212Updated 2 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆219Updated last year
- ☆151Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆168Updated last week
- Full-Length Alternative Isoform analysis of RNA☆229Updated this week
- STAR-Fusion codebase☆243Updated last month
- ☆279Updated 4 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- VarDict☆198Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆424Updated 2 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆215Updated 3 weeks ago
- BEDOPS: high-performance genomic feature operations☆340Updated last month