dpryan79 / ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
☆240Updated 2 years ago
Alternatives and similar repositories for ChromosomeMappings:
Users that are interested in ChromosomeMappings are comparing it to the libraries listed below
- Plot structural variant signals from many BAMs and CRAMs☆539Updated 9 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆251Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- Application for making ENCODE Blacklists☆296Updated 3 years ago
- RNA-seq workflow using STAR and DESeq2☆338Updated 8 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated 3 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆246Updated 2 months ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- parallel fastq-dump wrapper☆290Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆200Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆265Updated last year
- VarDict☆197Updated last year
- Web application to explore the Sequence Read Archive.☆216Updated 2 weeks ago
- ☆267Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆274Updated 9 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆315Updated 10 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆217Updated 2 weeks ago
- Annotation and Ranking of Structural Variation☆250Updated last month
- Count bases in BAM/CRAM files☆315Updated 3 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- BEDOPS: high-performance genomic feature operations☆328Updated this week
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆213Updated 10 months ago
- Detecting sites of genomic enrichment☆189Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆186Updated 4 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆438Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆209Updated this week
- dN/dS methods to quantify selection in cancer and somatic evolution☆220Updated 2 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆414Updated 3 months ago