dpryan79 / ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
☆238Updated 2 years ago
Alternatives and similar repositories for ChromosomeMappings:
Users that are interested in ChromosomeMappings are comparing it to the libraries listed below
- This Snakemake pipeline implements the GATK best-practices workflow☆247Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆538Updated 7 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆263Updated last year
- Application for making ENCODE Blacklists☆288Updated 3 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆240Updated 2 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆232Updated 3 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- RNA-seq workflow using STAR and DESeq2☆335Updated 6 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆206Updated 3 weeks ago
- Web application to explore the Sequence Read Archive.☆210Updated last month
- ☆146Updated 2 years ago
- parallel fastq-dump wrapper☆287Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆204Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆265Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆261Updated last year
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆380Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆269Updated 8 months ago
- Count bases in BAM/CRAM files☆312Updated 3 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆183Updated 4 years ago
- ☆240Updated 3 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- STAR-Fusion codebase☆237Updated 2 weeks ago
- Detecting sites of genomic enrichment☆190Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆202Updated 3 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆206Updated this week
- Documentation for the ANNOVAR software☆238Updated 3 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆211Updated 7 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆394Updated 10 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆457Updated last month