gkudla / hyb
hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data
☆13Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for hyb
- Core utilities for single-cell RNA-seq☆12Updated 9 months ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Public repository for building and analyzing protein complex maps☆11Updated 7 years ago
- Tutorial for the analysis of scRNA-seq data in R☆17Updated 6 years ago
- Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)☆8Updated 3 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 2 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 5 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- R interface to megadepth: BigWig and BAM related utilities☆11Updated 6 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Updated 3 years ago
- Galaxy Docker Image for the HiCExplorer☆10Updated 5 years ago
- BPNet manuscript code.☆11Updated 3 years ago
- Tools for assessing clustering robustness☆22Updated last week
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated last year
- RNA-Seq pipeline☆34Updated 9 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- CircRNA testing and ploting R package☆9Updated 3 years ago
- ☆11Updated 2 years ago
- ☆11Updated 6 years ago
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆12Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆24Updated last year
- dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline☆9Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- GEO RNA-seq Experiments Processing Pipeline☆20Updated 5 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago