gkudla / hybLinks
hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data
☆13Updated last year
Alternatives and similar repositories for hyb
Users that are interested in hyb are comparing it to the libraries listed below
Sorting:
- Core utilities for single-cell RNA-seq☆12Updated 4 months ago
- Gene orthologs for model organisms in a tidy data format☆14Updated 2 years ago
- Volume-regularized NMF☆17Updated 3 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 4 months ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 7 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 4 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated last month
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 4 months ago
- Interactive benchmarking of ranking and assignment methods☆16Updated last month
- R/Shiny package for network-integrated pathway enrichment analysis☆14Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆12Updated last year
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Updated 9 months ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- Gene-level general linear mixed model☆22Updated 7 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- Use batch balanced KNN (BBKNN) in R☆11Updated 2 months ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 3 months ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It al…☆13Updated 6 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 9 months ago
- Gene network analysis☆19Updated 2 years ago
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- CellAnn☆12Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago