OSU-BMBL / scread-protocolLinks
☆16Updated 2 years ago
Alternatives and similar repositories for scread-protocol
Users that are interested in scread-protocol are comparing it to the libraries listed below
Sorting:
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated this week
- ☆34Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- ☆17Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 2 years ago
- ☆55Updated last year
- ☆13Updated 7 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆16Updated 4 years ago
- ☆49Updated 10 months ago
- ☆22Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆24Updated 11 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- ☆18Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 4 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago