OSU-BMBL / scread-protocol
☆16Updated 2 years ago
Alternatives and similar repositories for scread-protocol:
Users that are interested in scread-protocol are comparing it to the libraries listed below
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆31Updated last year
- ☆13Updated 7 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆54Updated 3 months ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- A pipeline for scRNA-seq data analysis☆12Updated last year
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆17Updated 3 years ago
- ☆12Updated 6 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆14Updated last year
- ☆18Updated 10 months ago
- ☆54Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆19Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- ☆16Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆20Updated 10 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago