☆18Jul 3, 2022Updated 3 years ago
Alternatives and similar repositories for scread-protocol
Users that are interested in scread-protocol are comparing it to the libraries listed below
Sorting:
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- ☆21May 6, 2025Updated 9 months ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated last year
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆12Sep 30, 2024Updated last year
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated last year
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- ☆11May 24, 2024Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆16Jan 14, 2026Updated last month
- ☆13Jan 24, 2024Updated 2 years ago
- ☆13Mar 20, 2021Updated 4 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- ☆15Jan 28, 2023Updated 3 years ago
- ☆57Feb 23, 2024Updated 2 years ago
- Package to analyze Mass Spec Data☆12Aug 24, 2023Updated 2 years ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19May 18, 2025Updated 9 months ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- ☆17Mar 27, 2023Updated 2 years ago
- Class materials for the NIH HPC snakemake class☆15Sep 27, 2024Updated last year
- Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)☆18May 2, 2023Updated 2 years ago
- ☆17Sep 13, 2023Updated 2 years ago
- A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays…☆19Updated this week
- Cross-modal Identification of Tertiary Lymphoid Structures☆24Jun 19, 2024Updated last year
- ☆17Mar 6, 2024Updated last year
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 3 years ago
- ☆21Mar 22, 2023Updated 2 years ago
- ☆20Jan 9, 2024Updated 2 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Dec 2, 2021Updated 4 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆55Jan 6, 2025Updated last year
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆28Mar 4, 2024Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆25Mar 7, 2024Updated last year
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- bioinformatic pipeline for GLORI☆22May 19, 2024Updated last year
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆19Sep 24, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago