Alternatives and similar repositories for GenomicDataCommons

Users that are interested in GenomicDataCommons are comparing it to the libraries listed below

• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆100Updated last month
• Bioconductor / BiocIntro
  Course material for introductory R / Bioconductor courses
  ☆44Updated 2 years ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆72Updated 2 months ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 6 years ago
• macarthur-lab / exac_2015
  Companion repo for ExAC paper, 2015
  ☆33Updated 9 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆141Updated last month
• srp33 / TCGA_RNASeq_Clinical
  ☆62Updated 5 years ago
• bioinformatics-core-shared-training / ngs-in-bioc
  A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
  ☆43Updated 9 years ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated 7 months ago
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆68Updated last month
• isb-cgc / examples-R
  Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
  ☆31Updated 7 years ago
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆61Updated 6 years ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 8 years ago
• hansenlab / minfi
  Devel repository for minfi
  ☆61Updated last year
• jminnier / STARTapp
  The START App: R Shiny Transcriptome Analysis Resource Tool
  ☆88Updated 4 years ago
• obigriffith / biostar-tutorials
  Code for biostar tutorials - mostly R and Perl
  ☆50Updated last year
• YuLab-SMU / DOSE
  Disease Ontology Semantic and Enrichment analysis
  ☆122Updated last month
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• Bioconductor / BiocWorkshops
  2018 Bioconductor Workshops
  ☆76Updated 6 years ago
• Bioconductor / LearnBioconductor
  Training material for introductory R / Bioconductor courses
  ☆87Updated 2 years ago
• biodatascience / compbio_src
  Introduction to Computational Biology - source Rmarkdown files
  ☆63Updated last year
• OmnesRes / onco_lnc
  ☆35Updated 9 years ago
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆43Updated 6 months ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆97Updated 2 months ago
• RGLab / openCyto
  A package that provides data analysis pipeline for flow cytometry.
  ☆79Updated 2 months ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 10 months ago
• Bioconductor / bioconductor_docker
  Docker Containers for Bioconductor
  ☆87Updated last week
• kasperdanielhansen / genbioconductor
  Materials for Genomics Data Science: Introduction to Bioconductor
  ☆96Updated last year
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆94Updated last year
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 5 months ago