Bioconductor / GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
☆84Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for GenomicDataCommons
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆88Updated last week
- Code for biostar tutorials - mostly R and Perl☆50Updated 3 months ago
- Transcript quantification import for modular pipelines☆136Updated 7 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- Clone of the Bioconductor repository for the scater package.☆95Updated 4 months ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆104Updated last year
- ☆60Updated 4 years ago
- integrated RNA-seq Analysis Pipeline☆82Updated 5 years ago
- An R interface to enrichR☆77Updated 7 months ago
- An R package for inferring the subclonal architecture of tumors☆115Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆161Updated last month
- ☆34Updated 8 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆67Updated last week
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 8 years ago
- Devel repository for minfi☆60Updated 6 months ago
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆40Updated 8 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Platform for Interactive analysis and Visualization Of Transcriptomics data☆27Updated 4 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated 8 months ago
- Course material for introductory R / Bioconductor courses☆44Updated last year
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆104Updated 2 years ago
- An R Interface to the ImmuneSpace database portal☆24Updated 11 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆90Updated 3 years ago
- REVOLVER - Repeated Evolution in Cancer☆64Updated last year
- R data package for annotating/converting Gene IDs☆162Updated last year
- Analysis pipeline for cancer sequencing data☆110Updated 4 months ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago