Provide R access to the NCI Genomic Data Commons portal.
☆90Nov 7, 2025Updated 5 months ago
Alternatives and similar repositories for GenomicDataCommons
Users that are interested in GenomicDataCommons are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆111Nov 24, 2025Updated 5 months ago
- Toolbox package for organizing and working with TCGA data☆29Mar 26, 2026Updated last month
- Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons☆31Oct 11, 2018Updated 7 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆327Mar 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioconductor package for management of multi-assay data☆74Apr 16, 2026Updated 2 weeks ago
- Training material for introductory R / Bioconductor courses☆91Mar 15, 2023Updated 3 years ago
- Interactive visulizations for track-based genomic data in R☆15Sep 9, 2024Updated last year
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆27Apr 21, 2026Updated last week
- GREAT Analysis - Functional Enrichment on Genomic Regions☆98Jan 30, 2026Updated 3 months ago
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- Read Non-Rectangular Text Data☆32Nov 17, 2025Updated 5 months ago
- Class materials for the NIH HPC snakemake class☆15Sep 27, 2024Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆24Mar 15, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Apr 17, 2020Updated 6 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Mar 15, 2023Updated 3 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 3 weeks ago
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆104Jan 12, 2026Updated 3 months ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆34Mar 26, 2026Updated last month
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆35Updated this week
- TCGAbiolinks☆349Oct 7, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆201Jan 30, 2026Updated 3 months ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- Template for building a bioconductor workshop package using github actions☆23Apr 22, 2026Updated last week
- Materials for http://dib-training.readthedocs.org/en/pub/2015-11-09-docker.html☆14May 29, 2017Updated 8 years ago
- Draw heatmap simply using a tidy data frame☆361Feb 7, 2026Updated 2 months ago
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated 3 weeks ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆488Feb 25, 2026Updated 2 months ago
- ☆35Feb 11, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Shiny framework for workflow management and data visualization☆35May 20, 2025Updated 11 months ago
- Analysis tools for longevity research☆22Jul 23, 2017Updated 8 years ago
- Publication-ready volcano plots with enhanced colouring and labeling☆462Dec 3, 2025Updated 4 months ago
- R package for DER Finder, a method for differential expression analysis of RNA-seq data☆22Mar 6, 2015Updated 11 years ago
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago