Bioconductor / GenomicDataCommonsLinks
Provide R access to the NCI Genomic Data Commons portal.
☆89Updated 2 months ago
Alternatives and similar repositories for GenomicDataCommons
Users that are interested in GenomicDataCommons are comparing it to the libraries listed below
Sorting:
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆98Updated last month
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 5 months ago
- Bioconductor package for management of multi-assay data☆73Updated 2 weeks ago
- Course material for introductory R / Bioconductor courses☆44Updated 2 years ago
- Transcript quantification import for modular pipelines☆141Updated last month
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- ☆61Updated 5 years ago
- ☆35Updated 9 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated 2 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆73Updated last month
- Reactome Pathway Analysis☆43Updated 3 months ago
- Differential Count Data Analysis Toolbox☆60Updated last year
- PHATE dimensionality reduction method implemented in R☆79Updated 4 years ago
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆94Updated last year
- 2018 Bioconductor Workshops☆76Updated 6 years ago
- A package that provides data analysis pipeline for flow cytometry.☆79Updated 4 months ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87Updated 3 years ago
- Bioconductor facilities for parallel evaluation☆68Updated 3 weeks ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Updated 2 years ago
- Code for biostar tutorials - mostly R and Perl☆50Updated last year
- Glimma R package☆50Updated 11 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 7 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆89Updated 4 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆78Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis☆55Updated 10 months ago