FNL-MoCha / nextgenseq_pipeline
Exome/Capture/RNASeq Pipeline Implementation using snakemake
☆19Updated 5 years ago
Alternatives and similar repositories for nextgenseq_pipeline:
Users that are interested in nextgenseq_pipeline are comparing it to the libraries listed below
- Integrated copy number variation detection toolset☆26Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆26Updated 4 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- DriverPower☆26Updated this week
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆45Updated 2 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆21Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- Somatic point mutation caller☆17Updated 8 years ago
- Codes and Data for FFPEsig manuscript☆15Updated last year
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- ☆17Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated 3 months ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated 8 months ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆18Updated 5 years ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- ☆25Updated 6 years ago