broadinstitute / gdctoolsLinks
Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons
☆31Updated 7 years ago
Alternatives and similar repositories for gdctools
Users that are interested in gdctools are comparing it to the libraries listed below
Sorting:
- Provide R access to the NCI Genomic Data Commons portal.☆89Updated 4 months ago
- TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/☆36Updated 4 years ago
- Official repository for GDC User Guides in Markdown format☆68Updated last year
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Updated 2 years ago
- Examples for the Google Genomics Pipelines API.☆50Updated 7 years ago
- NGS course☆34Updated 8 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 3 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- Normalization for single cell RNA-seq data☆48Updated 4 months ago
- ☆35Updated 9 years ago
- Transcript quantification import for modular pipelines☆141Updated last week
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆126Updated 5 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- ☆62Updated 5 years ago
- Analysis pipeline for cancer sequencing data☆110Updated 5 months ago
- MuTect -- Accurate and sensitive cancer mutation detection☆100Updated 2 years ago
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆105Updated 2 years ago
- Python client for MyVariant.info web services.☆23Updated 8 months ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated last week
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Updated 5 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- ☆69Updated 3 years ago
- TCGA data acquisition and processing for Project Cognoma☆21Updated 7 years ago
- DNAnexus platform client libraries☆100Updated last week
- MyVariant.info: A BioThings API for human variant annotations☆95Updated last month
- bradner lab computation pipeline scripts☆54Updated last month
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆118Updated 4 months ago