broadinstitute / gdctoolsLinks
Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons
☆31Updated 6 years ago
Alternatives and similar repositories for gdctools
Users that are interested in gdctools are comparing it to the libraries listed below
Sorting:
- TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/☆36Updated 3 years ago
- Provide R access to the NCI Genomic Data Commons portal.☆89Updated 2 months ago
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Updated 2 years ago
- Official repository for GDC User Guides in Markdown format☆68Updated 11 months ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 3 years ago
- TCGA data acquisition and processing for Project Cognoma☆20Updated 7 years ago
- SevenBridges Python Api bindings☆46Updated 5 months ago
- Translation layer between the GDC Data Dictionary and psqlgraph☆28Updated 2 weeks ago
- Python client for MyVariant.info web services.☆23Updated 6 months ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆115Updated last month
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Updated 4 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- MyVariant.info: A BioThings API for human variant annotations☆95Updated last month
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆70Updated 2 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Reactome Pathway Analysis☆43Updated 3 months ago
- Chart to aid in understanding mutations and their location on a gene.☆22Updated 2 years ago
- Code for the in-dev PrediXcan Project☆27Updated 2 years ago
- Curated list of TCGA resources☆56Updated 7 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated last year
- Platform for Interactive analysis and Visualization Of Transcriptomics data☆27Updated 5 years ago
- ☆35Updated 9 years ago
- Transcript quantification import for modular pipelines☆140Updated 2 weeks ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Updated last year
- NGS course☆33Updated 8 years ago
- Data dictionary for the GDC☆53Updated 2 weeks ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆35Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated last month
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago