Alternatives and similar repositories for gdctools:

Users that are interested in gdctools are comparing it to the libraries listed below

• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆85Updated 3 months ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 2 years ago
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆35Updated 3 years ago
• tiagochst / ELMER
  Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…
  ☆23Updated last year
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• cpreid2 / gdc-rnaseq-tool
  Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
  ☆35Updated 4 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆52Updated last year
• Ensembl / postgap
  Linking GWAS studies to genes through cis-regulatory datasets
  ☆39Updated last year
• NCI-GDC / gdcdatamodel
  Translation layer between the GDC Data Dictionary and psqlgraph
  ☆28Updated 10 months ago
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 3 months ago
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆42Updated last year
• MaayanLab / appyter-catalog
  A catalog of appyter notebooks
  ☆35Updated 3 months ago
• EGA-archive / ega-download-client
  A Python-based EGA download client
  ☆96Updated 4 months ago
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated 11 months ago
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆60Updated 5 years ago
• biothings / myvariant.py
  Python client for MyVariant.info web services.
  ☆22Updated 2 weeks ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆54Updated 4 years ago
• rsemeraro / XomeBlender
  Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element
  ☆10Updated 4 years ago
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆56Updated last year
• EBISPOT / goci
  GWAS Catalog Ontology and Curation Infrastructure
  ☆26Updated 2 weeks ago
• ucsd-ccbb / VAPr
  VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
  ☆35Updated 3 years ago
• IARCbioinfo / awesome-TCGA
  Curated list of TCGA resources
  ☆53Updated 7 years ago
• bhklab / PharmacoDB
  Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
  ☆46Updated 6 years ago
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆47Updated last year
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆48Updated 10 months ago
• yuchaojiang / Canopy
  Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
  ☆69Updated 3 years ago
• reiterlab / treeomics
  Decrypting somatic mutation patterns to reveal the evolution of cancer
  ☆55Updated 3 years ago
• broadinstitute / single_cell_portal_core
  Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
  ☆65Updated this week
• OmnesRes / onco_lnc
  ☆34Updated 8 years ago