omicsCore / SEQprocessLinks
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
☆17Updated 5 years ago
Alternatives and similar repositories for SEQprocess
Users that are interested in SEQprocess are comparing it to the libraries listed below
Sorting:
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 weeks ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated last week
- The blog of tidyomics☆14Updated 4 months ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 5 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated 2 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago
- Explore design matrices interactively with R/Shiny☆38Updated last month
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Template for building a bioconductor workshop package using github actions☆21Updated 5 months ago
- Demonstration of the use of an R package to organize a data analysis project☆22Updated 5 years ago
- Automate package and project setup for Bioconductor packages☆54Updated 8 months ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 3 months ago
- ☆20Updated last month
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19Updated 5 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- An introduction to matrix factorization and PCA and SVD.☆41Updated 2 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆25Updated last week
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 6 months ago
- R interface to 'Gos'☆39Updated 2 years ago
- Introduction to the Bioconductor project☆18Updated last month
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 2 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated last year
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Updated 2 years ago
- Helper script for bioconductor/bioconductor_docker☆13Updated 8 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Updated last week
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15Updated 6 months ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Updated last year
- Glimma R package☆50Updated last year