seandavi / GEOqueryLinks
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
☆101Updated 3 weeks ago
Alternatives and similar repositories for GEOquery
Users that are interested in GEOquery are comparing it to the libraries listed below
Sorting:
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- An R interface to enrichR☆93Updated 10 months ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 9 months ago
- Transcript quantification import for modular pipelines☆142Updated 2 months ago
- Tools for manipulating annotated data matrices☆91Updated 4 years ago
- R data package for annotating/converting Gene IDs☆166Updated 5 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆84Updated 4 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 9 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis☆54Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆99Updated 3 months ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆98Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆69Updated 2 weeks ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 9 months ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Reactome Pathway Analysis☆43Updated last week
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆75Updated 5 months ago
- R package for analyzing single-cell RNA-seq data☆177Updated last year
- Devel repository for minfi☆64Updated last year
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆157Updated 2 weeks ago
- Bioconductor package for management of multi-assay data☆74Updated 3 weeks ago
- ☆62Updated 5 years ago