seandavi / GEOqueryLinks
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
☆104Updated 2 months ago
Alternatives and similar repositories for GEOquery
Users that are interested in GEOquery are comparing it to the libraries listed below
Sorting:
- An R interface to enrichR☆93Updated 11 months ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- R data package for annotating/converting Gene IDs☆168Updated 6 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Simplify functional enrichment results☆122Updated last year
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 9 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆46Updated 10 months ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 2 weeks ago
- Transcript quantification import for modular pipelines☆143Updated 4 months ago
- This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis☆55Updated last year
- Updated implementation of the GSEA-P R application for modern R distributions☆99Updated 4 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆69Updated 2 months ago
- Easily download publicly available GWAS summary statistics.☆78Updated 2 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Tools for manipulating annotated data matrices☆92Updated 4 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆166Updated 3 months ago
- Identify and correct invalid gene symbols☆62Updated last year
- ☆62Updated 5 years ago
- R package for analyzing single-cell RNA-seq data☆179Updated last year
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆75Updated 7 months ago
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆95Updated last year
- Devel repository for minfi☆64Updated last year
- Provide R access to the NCI Genomic Data Commons portal.☆90Updated 2 months ago
- MSigDB gene sets for multiple organisms in a tidy data format☆84Updated 6 months ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago