NBISweden / workshop-epigenomics-RTDsLinks
workshop website on readthedocs
☆21Updated 3 months ago
Alternatives and similar repositories for workshop-epigenomics-RTDs
Users that are interested in workshop-epigenomics-RTDs are comparing it to the libraries listed below
Sorting:
- R package wrapping bedtools☆44Updated 10 months ago
- ☆29Updated 2 years ago
- Peak caller for CUT&TAG data☆30Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated last week
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆38Updated 3 years ago
- Workshop • Analysis of RNA-seq data☆37Updated last year
- ☆34Updated 2 months ago
- Pipeline for Cut&Tag analysis☆24Updated 9 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 4 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last month
- Merge fastq files split over lanes☆20Updated 7 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- An R interface to the MEME Suite☆54Updated last week
- Pan-transcriptomic phenotyping☆18Updated 2 months ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Updated 4 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- a set of NGS pipelines☆24Updated last week
- Query the gene models of a given organism/assembly☆27Updated 2 months ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated last month
- ☆23Updated 4 years ago