rderelle / Broccoli
orthology assignment using phylogenetic and network analyses
☆44Updated last month
Related projects ⓘ
Alternatives and complementary repositories for Broccoli
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆37Updated last week
- ☆27Updated 4 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆34Updated 6 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆36Updated 10 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆59Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆28Updated 6 months ago
- A program for detection of tRNA genes☆56Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- perSVade: personalized Structural Variation detection☆36Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆50Updated last year
- ☆69Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆79Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆27Updated last year
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆34Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated 3 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆13Updated 4 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated 11 months ago
- Documentation for Evolview☆26Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆64Updated 6 years ago