rderelle / BroccoliLinks
orthology assignment using phylogenetic and network analyses
☆53Updated 2 weeks ago
Alternatives and similar repositories for Broccoli
Users that are interested in Broccoli are comparing it to the libraries listed below
Sorting:
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- STAG: Species Tree from All Genes☆35Updated 7 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- k-mer learning materials☆83Updated 11 months ago
- HyPhy standalone analyses☆52Updated last month
- ☆35Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- ☆27Updated 11 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- ☆68Updated last week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- Conditional Reciprocal Best Blast☆43Updated 8 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Multi-genome synteny block visualization tool☆52Updated last week
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆49Updated last year
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆37Updated 6 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 3 years ago
- Bifrost graph gene caller.☆98Updated 3 weeks ago