rderelle / Broccoli
orthology assignment using phylogenetic and network analyses
☆46Updated 4 months ago
Alternatives and similar repositories for Broccoli:
Users that are interested in Broccoli are comparing it to the libraries listed below
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆70Updated this week
- A Nextflow pipeline for evaluating assembly quality☆28Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated 3 weeks ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 10 months ago
- Documentation for Evolview☆26Updated 3 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆47Updated 8 months ago
- Detection of incorrectly labeled sequences across kingdoms☆82Updated 2 years ago
- Tiberius is a deep learning gene finder.☆48Updated this week
- A comparative genomics workflow using Nextflow, conda, Julia and R☆36Updated 9 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆77Updated last month
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 2 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆49Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆62Updated last month
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- ☆32Updated 4 years ago
- perSVade: personalized Structural Variation detection☆38Updated 2 months ago
- A program for assessing the T2T genome continuity☆64Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆28Updated 3 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Visualize whole genome alignments as linear maps☆70Updated 4 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year