Alternatives and similar repositories for qupath-chcapi-extension:

Users that are interested in qupath-chcapi-extension are comparing it to the libraries listed below

• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆119Updated this week
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆76Updated 2 weeks ago
• imi-bigpicture / wsidicom
  Python package for reading DICOM WSI file sets.
  ☆43Updated 3 weeks ago
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆63Updated 4 years ago
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆70Updated last week
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆71Updated 3 weeks ago
• SBU-BMI / quip_distro
  ☆32Updated 11 months ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated 3 weeks ago
• SarderLab / Histo-cloud
  ☆21Updated last month
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆40Updated last month
• serrob23 / falsecolor
  FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…
  ☆30Updated 3 years ago
• DigitalSlideArchive / HistomicsStream
  A whole-slide image reader for TensorFlow
  ☆23Updated 6 months ago
• michaellee1 / CellSeg
  ☆23Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆30Updated last year
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 10 months ago
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 7 months ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆24Updated last week
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆99Updated last month
• jnkather / DeepHistology
  A pan-cancer platform for mutation prediction from routine histology
  ☆68Updated 3 years ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆39Updated last week
• AstroPathJHU / AstroPathPipeline
  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …
  ☆18Updated this week
• maragraziani / interpretAI_DigiPath
  Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
  ☆21Updated 3 years ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆115Updated 4 months ago
• gerstung-lab / PC-CHiP
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆76Updated 4 years ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆53Updated 2 months ago
• mostafajahanifar / nuclick_torch
  Pytorch implementation of NuClick for interactive cell segmentation
  ☆32Updated last year
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆23Updated 2 weeks ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆25Updated 2 weeks ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆106Updated last month
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆60Updated 2 months ago