Helpers to use BigDataViewer as a quick visualization tool in other projects.
☆26Jun 13, 2024Updated last year
Alternatives and similar repositories for bigdataviewer-vistools
Users that are interested in bigdataviewer-vistools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImgLib2-based viewer for registered SPIM stacks and more☆42Mar 20, 2026Updated last month
- ☆21Apr 28, 2026Updated last week
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Fiji plugins for starting BigDataViewer and exporting data.☆22Sep 19, 2025Updated 7 months ago
- Simple Maven project for an ImageJ2 command☆34Apr 11, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Friendly base POM for all SciJava-based software☆28Mar 19, 2026Updated last month
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 2 months ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 11 months ago
- Deep Zoom Plate Viewer for microscopy images☆18Apr 15, 2026Updated 3 weeks ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 3 years ago
- ImageJ+ImageJ2 compatibility layer☆17Apr 24, 2026Updated last week
- StarDist plugin for ImageJ☆31May 9, 2022Updated 3 years ago
- ImageJ convenience layer for N5☆19Updated this week
- Browse your OMERO database from within napari.☆40Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated last month
- Various parts made for fluorescence microscopy + optics work☆17Jul 22, 2019Updated 6 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Apr 20, 2026Updated 2 weeks ago
- ☆22Mar 13, 2024Updated 2 years ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆74Feb 26, 2026Updated 2 months ago
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated 2 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆80Apr 22, 2026Updated 2 weeks ago
- The ImageJ wiki☆29Updated this week
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Oct 27, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- Mistral-java-client is a client for the Mistral.ai API. It allows you to easily interact with the Mistral AI models. Currently supports a…☆12Jul 28, 2025Updated 9 months ago
- Shell scripts for scientific projects written in Java☆17Nov 26, 2025Updated 5 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Apr 13, 2026Updated 3 weeks ago
- AutoTx - an intelligent background file transfer service for Windows.☆28Mar 25, 2026Updated last month
- Not HDF5☆201Updated this week
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 10 months ago
- ImageJ Ops: "Write once, run anywhere" image processing☆93Aug 29, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated last year
- ☆112Apr 13, 2026Updated 3 weeks ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 10 years ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Feb 18, 2025Updated last year
- A tool for manual pointwise deformable registration using bigdataviewer.☆36Apr 29, 2026Updated last week
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Apr 23, 2026Updated last week