bigdataviewer / bigdataviewer-vistoolsLinks
Helpers to use BigDataViewer as a quick visualization tool in other projects.
☆25Updated last year
Alternatives and similar repositories for bigdataviewer-vistools
Users that are interested in bigdataviewer-vistools are comparing it to the libraries listed below
Sorting:
- ImgLib2-based viewer for registered SPIM stacks and more☆41Updated this week
- ☆20Updated last week
- python tools for BigDataViewer☆22Updated 11 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated last month
- ImageJ convenience layer for N5☆19Updated last month
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- Fiji plugins for starting BigDataViewer and exporting data.☆22Updated 3 months ago
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 8 months ago
- ☆111Updated last week
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆25Updated 3 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- ☆13Updated 5 years ago
- Running compute-intense parts of BigStitcher distributed☆28Updated last week
- Create 3D/4D animations using a natural language-based syntax☆61Updated 6 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 3 weeks ago
- ☆13Updated 5 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 2 months ago
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆97Updated 2 weeks ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆12Updated 3 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- ☆23Updated 4 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 7 months ago