JasonJYang / iDPath
Deep Learning Can Identify Explainable Reasoning Paths of Mechanism of Drug Action for Drug Repurposing from Multilayer Biological Network
☆11Updated 8 months ago
Alternatives and similar repositories for iDPath:
Users that are interested in iDPath are comparing it to the libraries listed below
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆20Updated 3 years ago
- A deep generative neural network based approach to impute drug response☆20Updated 3 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆66Updated 2 years ago
- ☆17Updated 2 years ago
- ☆17Updated 7 months ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 6 months ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆54Updated 4 years ago
- Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆17Updated last month
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆33Updated last year
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆19Updated 10 months ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Updated last year
- DeepTTC: a transformer-based model for predicting cancer drug response☆16Updated last year
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆49Updated 4 years ago
- This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…☆15Updated 5 years ago
- ☆27Updated last month
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆110Updated 3 years ago
- Python package to load and query ARCHS4 data☆21Updated last month
- Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …☆25Updated last year
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- Cancer Drug Response prediction using a Recommender System☆42Updated last year
- Biological Network Integration using Convolutions☆62Updated last year
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆51Updated 11 months ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- drugbank相关数据的处理,包括获取药物sdf结构文件,drug相关信息,drug作用相关蛋白信息,drugbank中drug id与其他数据库的映射,protein蛋白相关信息到其他数据库的映射☆19Updated 3 years ago
- ☆23Updated 4 years ago
- Multi-omics integration method using AE and GCN☆34Updated last year
- Predict drug response with graph convolutional network.☆9Updated 4 years ago
- ☆33Updated 7 years ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago