Alternatives and similar repositories for Microbial-Interkingdom-Suppl

Users that are interested in Microbial-Interkingdom-Suppl are comparing it to the libraries listed below

• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆32Updated 6 years ago
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 11 months ago
• BSSeeker / BSseeker2
  A versatile aligning pipeline for bisulfite sequencing data
  ☆65Updated 6 years ago
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆62Updated last year
• alexa-kur / miQTL_cookbook
  ☆46Updated 5 years ago
• shenmengyuan / RNA_seq_Biotrainee
  DEG analysis and KEGG/GO enrichment analysis
  ☆69Updated 7 years ago
• YongxinLiu / MicrobiomeProtocol
  Microbiome Protocol eBook related documents and scripts.
  ☆49Updated 4 years ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆65Updated 6 years ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 3 years ago
• Tong-Chen / s-plot
  A simple plot library
  ☆52Updated 8 years ago
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆66Updated 4 years ago
• bioinform / rnacocktail
  ☆89Updated 4 years ago
• JinfengChen / Scripts
  ☆74Updated 5 years ago
• irusri / Extract-intron-from-gff3
  This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
  ☆33Updated 6 years ago
• fbemm / onefc-oneasm
  Simple code snippets and data for the One Flowcell - One Assembly study
  ☆35Updated 7 years ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆115Updated last year
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago
• bmansfeld / QTLseqr
  QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
  ☆80Updated 5 years ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 6 years ago
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 6 years ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆91Updated last year
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆90Updated last month
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆58Updated 3 months ago
• YuSugihara / QTL-seq
  QTL-seq pipeline to identify causative mutations responsible for a phenotype
  ☆57Updated 7 months ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated 2 weeks ago
• zellerlab / crc_meta
  Code and analysis results for the CRC shotgun meta-analysis
  ☆38Updated 2 years ago
• csf-ngs / fastqc
  csf fork of fastqc for usage on selected reads of unaligned bam file
  ☆48Updated 12 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 9 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆73Updated 3 years ago