Variant-aware CRISPR off-target nomination
☆24Jan 26, 2026Updated 2 months ago
Alternatives and similar repositories for CRISPRme
Users that are interested in CRISPRme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 19, 2019Updated 7 years ago
- Analysis pipeline for the GUIDE-seq assay.☆81Jun 14, 2023Updated 2 years ago
- a guideRNA database generation tool☆18Mar 3, 2025Updated last year
- ☆15Oct 10, 2023Updated 2 years ago
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tool package to perform in-silico CRISPR analysis and assessment☆34Nov 17, 2025Updated 4 months ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆334Apr 2, 2026Updated last week
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14Feb 28, 2026Updated last month
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆108Feb 15, 2024Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Analysis pipeline for the GUIDE-seq assay.☆30Aug 1, 2025Updated 8 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19May 26, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- RNAseq pipeline centered on Salmon☆29Nov 21, 2024Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Sep 9, 2025Updated 7 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Mar 15, 2026Updated last month
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- off-targeting assessment of Cas9 gRNAs☆15Apr 27, 2021Updated 4 years ago
- Reproducible GSEA Benchmarking☆14Mar 26, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- plutus_backtest is a python package for backtesting investment decisions using Python 3.6 and above.☆12Aug 1, 2022Updated 3 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25May 18, 2021Updated 4 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆16May 7, 2023Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆97Aug 31, 2022Updated 3 years ago
- List of software/websites/databases/other stuff for genome engineering☆572Jun 20, 2024Updated last year
- Index your Gmail emails in order to ask questions about them using OpenAI conversational models☆11Nov 17, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Digenome-toolkit ver2.☆16Nov 1, 2021Updated 4 years ago
- Heranow website and dashboard☆12Nov 13, 2024Updated last year
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Aug 21, 2025Updated 7 months ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 2 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- A simple Python and Dash Plotly app that visualizes hard-to-process data from eGovernment indexes by the European Union and the United Na…☆12Jan 11, 2024Updated 2 years ago