Variant-aware CRISPR off-target nomination
☆28Aug 13, 2026Updated this week
Alternatives and similar repositories for CRISPRme
Users that are interested in CRISPRme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool package to perform in-silico CRISPR analysis and assessment☆42Updated this week
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆30Apr 2, 2026Updated 4 months ago
- ☆10Jan 19, 2019Updated 7 years ago
- CHANGE-seq analysis pipeline☆12Dec 18, 2025Updated 7 months ago
- Analysis pipeline for the GUIDE-seq assay.☆82Jun 14, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a guideRNA database generation tool☆21Mar 3, 2025Updated last year
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆352Jul 30, 2026Updated 2 weeks ago
- ☆10Mar 6, 2025Updated last year
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- ☆16Jul 9, 2026Updated last month
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆110Feb 15, 2024Updated 2 years ago
- RNAseq pipeline centered on Salmon☆29Nov 21, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆30Aug 1, 2025Updated last year
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Jul 22, 2026Updated 3 weeks ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆22Sep 9, 2025Updated 11 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Jun 15, 2026Updated last month
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- plutus_backtest is a python package for backtesting investment decisions using Python 3.6 and above.☆12Aug 1, 2022Updated 4 years ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- ☆14Sep 17, 2021Updated 4 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆26May 18, 2021Updated 5 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16May 7, 2023Updated 3 years ago
- List of software/websites/databases/other stuff for genome engineering☆579Jul 29, 2026Updated 2 weeks ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆107Aug 31, 2022Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- Digenome-toolkit ver2.☆15Nov 1, 2021Updated 4 years ago