blab / zika-seq
Pipelines to do MinION sequencing of Zika virus
☆15Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for zika-seq
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- ☆19Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Tutorial on using E-utilities☆19Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 4 months ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- ☆23Updated 6 years ago
- Guide to transcriptome assembly & analysis☆21Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- Ebola virus surveillance☆16Updated 8 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 7 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated 7 months ago
- Adapters for trimming☆30Updated 5 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 6 years ago