blab / zika-seq
Pipelines to do MinION sequencing of Zika virus
☆15Updated 5 years ago
Alternatives and similar repositories for zika-seq:
Users that are interested in zika-seq are comparing it to the libraries listed below
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- ☆17Updated 9 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ☆17Updated 6 years ago
- ☆19Updated 7 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆28Updated 9 months ago