blab / zika-seqLinks
Pipelines to do MinION sequencing of Zika virus
☆16Updated 6 years ago
Alternatives and similar repositories for zika-seq
Users that are interested in zika-seq are comparing it to the libraries listed below
Sorting:
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆18Updated 8 years ago
- The Zika bioinformatics pipeline☆35Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 8 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated 11 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago