bebatut / enasearch
A Python library for interacting with ENA's API
☆22Updated 3 years ago
Alternatives and similar repositories for enasearch:
Users that are interested in enasearch are comparing it to the libraries listed below
- Read contamination removal☆24Updated 11 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- ☆17Updated 7 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- ☆23Updated 5 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last month
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆30Updated 6 years ago
- blast, shmlast☆21Updated 4 years ago
- ☆19Updated 7 years ago
- ☆30Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- reference free variant assembly☆32Updated last year
- Python package for common tasks in bioinformatic.☆13Updated last year
- SARs-CoV-2 Primer schemes☆15Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆29Updated this week
- Explore and analyze biological sequence data☆16Updated 5 months ago
- distance based phylogenetic placement☆26Updated 10 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆32Updated last month
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 6 months ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago