asmngs / asmngs20Links
ASMNGS20 - 2020 Conference Details
☆15Updated 3 years ago
Alternatives and similar repositories for asmngs20
Users that are interested in asmngs20 are comparing it to the libraries listed below
Sorting:
- Recombination-free trees☆58Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- ☆36Updated 2 months ago
- SC2 variant detection and composition pipeline☆17Updated last year
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆29Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆36Updated 3 years ago
- Code Safety Inspection Service☆20Updated 2 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated 10 months ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆29Updated this week
- Metagenomic Analysis in Real Time☆24Updated this week
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 11 months ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago