asmngs / asmngs20Links
ASMNGS20 - 2020 Conference Details
☆15Updated 3 years ago
Alternatives and similar repositories for asmngs20
Users that are interested in asmngs20 are comparing it to the libraries listed below
Sorting:
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Recombination-free trees☆60Updated last month
- ☆36Updated 6 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆56Updated last week
- all methods related to Enterobase☆43Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 5 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆80Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆63Updated 3 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last month
- Code Safety Inspection Service☆20Updated 3 years ago
- Order and orientation of complete bacterial genomes☆28Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆37Updated 4 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago