asmngs / asmngs20Links
ASMNGS20 - 2020 Conference Details
☆15Updated 3 years ago
Alternatives and similar repositories for asmngs20
Users that are interested in asmngs20 are comparing it to the libraries listed below
Sorting:
- Split Kmer Analysis☆65Updated 3 years ago
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- Recombination-free trees☆60Updated 3 weeks ago
- Code Safety Inspection Service☆20Updated 3 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- ☆37Updated 3 years ago
- ☆36Updated 5 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 weeks ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 3 weeks ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆57Updated this week
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Order and orientation of complete bacterial genomes☆28Updated 2 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆39Updated 3 months ago
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- all methods related to Enterobase☆43Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 3 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Influenza data pipeline to automate genotyping assignment☆37Updated 3 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 2 years ago