Python implementation of scTenifoldNet and scTenifoldKnk workflows.
☆67Aug 20, 2026Updated last week
Alternatives and similar repositories for scTenifoldpy
Users that are interested in scTenifoldpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆279Jul 10, 2026Updated last month
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆42Jul 10, 2026Updated last month
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆26Jun 23, 2026Updated 2 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 8 months ago
- ☆12Dec 17, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- ☆59Feb 23, 2024Updated 2 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data☆19May 7, 2022Updated 4 years ago
- ☆34Feb 25, 2025Updated last year
- ☆12Dec 4, 2023Updated 2 years ago
- ☆17Apr 2, 2023Updated 3 years ago
- ☆184Jan 30, 2026Updated 7 months ago
- Code used to process the data of the HBCA project☆34Feb 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A modular tool for proportion analysis in single-cell sequencing data☆29Feb 26, 2026Updated 6 months ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆15Oct 23, 2024Updated last year
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆81Nov 23, 2025Updated 9 months ago
- trajectory inference☆109Jan 27, 2025Updated last year
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆481Jun 6, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Quantifying metabolism activity at the single-cell resolution☆195Aug 20, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- inferring regulatory cellular dynamics☆186Updated this week
- GWAS genetics Fine-mapping method☆18Jul 27, 2026Updated last month
- A fast and programmatic MELODI☆17Apr 16, 2024Updated 2 years ago
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆21Mar 17, 2024Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated last month
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- Implementation of CellNEST method☆69Jun 23, 2026Updated 2 months ago
- scDrug: From scRNA-seq to Drug Repositioning☆46May 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Jul 8, 2024Updated 2 years ago
- https://jinghuazhao.github.io/pQTLtools/☆24Jun 17, 2026Updated 2 months ago
- scType rewritten in python☆25Nov 7, 2024Updated last year
- An R package for drug response prediction and drug-gene association prediction.☆35Jun 13, 2026Updated 2 months ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago