Alternatives and similar repositories for scTenifoldpy

Users that are interested in scTenifoldpy are comparing it to the libraries listed below

• yutongo / TIGON
  ☆49Updated 8 months ago
• xiaoyeye / TFvelo
  ☆46Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆68Updated last year
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆74Updated 6 months ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆61Updated 2 months ago
• AllonKleinLab / paper-data
  ☆22Updated 2 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆85Updated 11 months ago
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆27Updated last year
• Roy-lab / scMTNI
  ☆30Updated 4 months ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆56Updated 6 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated 2 years ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 10 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• snehamitra / SCARlink
  ☆61Updated last week
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆44Updated 4 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆57Updated 2 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆62Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆62Updated last year
• federicobocci / spliceJAC
  ☆10Updated 3 years ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 3 months ago
• ImmucanWP7 / immucan-scdb
  ☆17Updated 2 years ago
• WanluLiuLab / scAtlasVAE
  ☆40Updated 5 months ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated 2 years ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆22Updated 2 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆102Updated 3 months ago
• LungCellAtlas / mapping_data_to_the_HLCA
  Repository to perform mapping of new datasets to the Human Lung Cell Atlas.
  ☆20Updated 2 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆81Updated 9 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated last year