Alternatives and similar repositories for scTenifoldpy

Users that are interested in scTenifoldpy are comparing it to the libraries listed below

• xiaoyeye / TFvelo
  ☆46Updated last year
• Roy-lab / scMTNI
  ☆31Updated 5 months ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆74Updated 8 months ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 4 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆69Updated last year
• yutongo / TIGON
  ☆50Updated 10 months ago
• WanluLiuLab / scAtlasVAE
  ☆40Updated 6 months ago
• AllonKleinLab / paper-data
  ☆22Updated 3 months ago
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆46Updated 6 years ago
• snehamitra / SCARlink
  ☆61Updated last month
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆114Updated last year
• ImmucanWP7 / immucan-scdb
  ☆17Updated 2 years ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆62Updated last week
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated 2 years ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆30Updated last year
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆29Updated last month
• xleizi / easySCF
  ☆48Updated 2 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆58Updated 2 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆35Updated 4 months ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated 2 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆43Updated last year
• LungCellAtlas / mapping_data_to_the_HLCA
  Repository to perform mapping of new datasets to the Human Lung Cell Atlas.
  ☆20Updated 2 years ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆22Updated 2 years ago
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆27Updated last year
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆24Updated last year
• madilabcode / scNET
  ☆59Updated 3 weeks ago
• gabrielakinker / CCLE_heterogeneity
  ☆62Updated 2 years ago
• felixhorns / jungle
  ☆12Updated 5 years ago