Alternatives and similar repositories for scTenifoldpy

Users that are interested in scTenifoldpy are comparing it to the libraries listed below

• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated 2 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 9 months ago
• Roy-lab / scMTNI
  ☆28Updated last week
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆26Updated this week
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆52Updated last year
• yutongo / TIGON
  ☆47Updated 4 months ago
• ailabstw / scDrug
  scDrug: From scRNA-seq to Drug Repositioning
  ☆34Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last month
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆45Updated 5 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆50Updated last week
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆62Updated last year
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆59Updated 7 months ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆52Updated last year
• xiaoyeye / TFvelo
  ☆45Updated last year
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆51Updated last year
• xleizi / easySCF
  ☆43Updated last month
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆121Updated last month
• federicobocci / spliceJAC
  ☆10Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 7 months ago
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆48Updated 2 years ago
• LungCellAtlas / mapping_data_to_the_HLCA
  Repository to perform mapping of new datasets to the Human Lung Cell Atlas.
  ☆19Updated 2 years ago
• AllonKleinLab / paper-data
  ☆20Updated this week
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆69Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 6 months ago
• WanluLiuLab / scAtlasVAE
  ☆37Updated last month
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 9 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆110Updated 10 months ago