Cell identification in high-resolution Spatial Transcriptomics
☆15Dec 3, 2025Updated 8 months ago
Alternatives and similar repositories for Cellist
Users that are interested in Cellist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Updated this week
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆25Jun 23, 2026Updated last month
- ☆49Jun 3, 2026Updated 2 months ago
- ☆13Jul 15, 2022Updated 4 years ago
- Segmentation-free Analysis of In Situ Capture data☆14Jul 6, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 8 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- ☆18Dec 4, 2025Updated 8 months ago
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆26Apr 27, 2026Updated 3 months ago
- Robust and scalable single-cell signature scoring☆28Jul 28, 2026Updated last week
- ☆13Jan 23, 2025Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Mar 28, 2025Updated last year
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated 3 weeks ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 2 months ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment☆23Aug 2, 2026Updated last week
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆12Nov 9, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 7 months ago
- ☆13Apr 27, 2022Updated 4 years ago
- ☆18Jan 28, 2026Updated 6 months ago
- ☆61Aug 6, 2025Updated last year
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated 2 weeks ago
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆116Jul 4, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Sep 29, 2023Updated 2 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 8 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 11 months ago
- A collection of easy-to-use custom ggplot2-based functions for data exploration and analysis. Each function handles data preprocessing an…☆27Dec 23, 2025Updated 7 months ago
- A lightweight, ultrafast and general embedding framework for large-scale spatial omics data☆31May 28, 2026Updated 2 months ago
- Programming for Biology Class @ CSHL 2022☆14Oct 4, 2024Updated last year