Fast metagenome analysis toolkit
☆28Sep 3, 2024Updated last year
Alternatives and similar repositories for metafast
Users that are interested in metafast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Jan 16, 2024Updated 2 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 7 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆52Feb 8, 2022Updated 4 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- ☆23Sep 27, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 9 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 8 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Low memory multithreaded hash table☆24Mar 23, 2015Updated 11 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- Find Unique genomic Regions☆34Jun 25, 2026Updated last month
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 months ago
- ☆47Jun 27, 2023Updated 3 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Aug 1, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 7 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆17Jul 14, 2026Updated 3 weeks ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 3 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆23May 19, 2026Updated 2 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆49Apr 14, 2020Updated 6 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated this week
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- sfasta☆35Feb 25, 2026Updated 5 months ago
- just annotate it, dammit!☆94Aug 22, 2023Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆21Jul 24, 2023Updated 3 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆27Nov 20, 2023Updated 2 years ago
- Strain resolver for metagenomics☆82Aug 2, 2024Updated 2 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆52May 5, 2026Updated 3 months ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆32Sep 12, 2023Updated 2 years ago