LeeBergstrand / Genbank-DownloadersLinks
A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.
☆15Updated 8 years ago
Alternatives and similar repositories for Genbank-Downloaders
Users that are interested in Genbank-Downloaders are comparing it to the libraries listed below
Sorting:
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Metagenomics microbial abundance quantification☆28Updated 2 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Latest MOCAT2 version☆19Updated 4 years ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆19Updated 11 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- ☆22Updated 5 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- MIRA sequence assembler☆29Updated 5 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆32Updated 10 months ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Updated 6 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Portable database of microhaplotype marker and allele frequency data☆10Updated this week
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last week
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆36Updated 2 years ago