sanger-pathogens / mlst_checkLinks
Multilocus sequence typing by blast using the schemes from PubMLST
☆30Updated 3 years ago
Alternatives and similar repositories for mlst_check
Users that are interested in mlst_check are comparing it to the libraries listed below
Sorting:
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- ☆40Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 8 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Gene-flank analysis tool☆30Updated 9 months ago
- de.NBI Nanopore Training Course☆20Updated 3 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Pangenome analysis of eukaryotes.☆19Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago