Multilocus sequence typing by blast using the schemes from PubMLST
☆30Jun 23, 2022Updated 4 years ago
Alternatives and similar repositories for mlst_check
Users that are interested in mlst_check are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Jun 12, 2026Updated last month
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆90Updated this week
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Mar 2, 2023Updated 3 years ago
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆47Sep 3, 2020Updated 5 years ago
- Utilities written for bioinformatics☆17Sep 27, 2022Updated 3 years ago
- Scan contig files against PubMLST typing schemes☆294Jun 17, 2026Updated last month
- ☆144Jul 9, 2026Updated 2 weeks ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 7 months ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆14Nov 8, 2017Updated 8 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 5 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- BSR-Based Allele Calling Algorithm☆149Jul 8, 2026Updated 2 weeks ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python package to update the MLST database for the mlst tool.☆29Updated this week
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆76Updated this week
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 8 months ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 2 months ago
- vSNP -- validate SNPs☆23Jun 24, 2026Updated 3 weeks ago
- 충남대학교 김준 연구실 튜토리얼☆54Jan 7, 2025Updated last year
- ☆19Dec 7, 2020Updated 5 years ago
- A curated database of completed assemblies with taxonomy IDs☆53Jun 7, 2026Updated last month
- ☆23Sep 27, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- Making whole bacterial genome sequencing data analysis easy☆114Apr 22, 2025Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆107Feb 6, 2025Updated last year
- Fast download BLAST databases from NCBI.☆35Feb 7, 2024Updated 2 years ago
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆44Dec 11, 2020Updated 5 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 5 months ago