nh13 / basespace-invadersLinks
A collection of tools to work with Illumina's basespace
☆13Updated 6 years ago
Alternatives and similar repositories for basespace-invaders
Users that are interested in basespace-invaders are comparing it to the libraries listed below
Sorting:
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Variant Calling Pipeline in Cromwell/WDL☆22Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- ☆78Updated 11 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- ☆55Updated 5 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Specifications for PacBio® native file formats☆31Updated last year
- ☆96Updated 3 years ago
- Structural Variant Index☆75Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated last month
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Sync paired-end FASTA/Q files and keep singleton reads☆18Updated last month