A normalization and copy number variation calling procedure for whole exome DNA sequencing data.
☆11Sep 29, 2019Updated 6 years ago
Alternatives and similar repositories for CODEX
Users that are interested in CODEX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆41Aug 17, 2021Updated 4 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12Jan 8, 2026Updated 2 months ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Toolkit for single-cell analysis of chromatin accessibility☆12Feb 27, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- Single-cell COPy number Estimation☆16Dec 11, 2022Updated 3 years ago
- Repository for Short Course: Deep Learning in Omics☆17Jan 13, 2022Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Oct 15, 2020Updated 5 years ago
- ☆13Jan 28, 2019Updated 7 years ago
- ☆19Jul 17, 2019Updated 6 years ago
- ☆23Mar 20, 2026Updated last week
- ☆13Sep 4, 2025Updated 6 months ago
- R interface for the QuickJS lightweight javascript engine☆17Mar 1, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package for analysing diversity dynamics with fossil occurrences☆12Dec 1, 2025Updated 3 months ago
- ☆13Feb 21, 2025Updated last year
- Documenting usage and experience with bioinformatic tools☆40Sep 11, 2015Updated 10 years ago
- Secure Cloud Object REsource: file transfer microservice☆18Jan 26, 2026Updated 2 months ago
- Implementation of seq2seq word-level model using keras☆12Dec 18, 2017Updated 8 years ago
- ☆13Oct 7, 2019Updated 6 years ago
- Simple R Console☆17Oct 23, 2025Updated 5 months ago
- An R package for caching function outputs in memory (memoization)☆13Dec 9, 2025Updated 3 months ago
- From C to R and back again☆12Jan 4, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A clib package for the makeheaders command http://www.hwaci.com/sw/mkhdr/☆14Dec 11, 2014Updated 11 years ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- A client for the Ensembl REST API written in the Python programming language☆29Dec 8, 2025Updated 3 months ago
- Transform Serial R Code into Parallel R Code☆11Nov 17, 2020Updated 5 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Apr 7, 2024Updated last year
- DNA copy number detection from off-target sequence data☆33May 17, 2018Updated 7 years ago
- DEPRECATED Tools for manipulating cell expression format (CEF) files☆12Oct 10, 2017Updated 8 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- Writing a custom connection for R☆16May 15, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Dec 5, 2023Updated 2 years ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆22Mar 17, 2026Updated last week
- ☆32Dec 6, 2017Updated 8 years ago
- Access to the Unix 'curses' library from R.☆17Sep 26, 2023Updated 2 years ago
- Exposing C structrs to R☆14Apr 27, 2022Updated 3 years ago
- R functions for duckdb☆16Nov 21, 2024Updated last year
- Pairwise Controlled Manifold Approximation (PaCMAP) for dimensionality reduction☆20Feb 3, 2026Updated last month