A normalization and copy number variation calling procedure for whole exome DNA sequencing data.
☆10Sep 29, 2019Updated 7 years ago
Alternatives and similar repositories for CODEX
Users that are interested in CODEX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆42Aug 17, 2021Updated 5 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- ☆14Jan 28, 2019Updated 7 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆11Oct 27, 2026Updated last week
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 5 months ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Repository for Short Course: Deep Learning in Omics☆17Jan 13, 2022Updated 4 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- ☆16Dec 19, 2016Updated 9 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆31Oct 15, 2020Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆20Jul 17, 2019Updated 7 years ago
- ☆23Updated this week
- Example project for integrating igv.js and flask☆26May 17, 2025Updated last year
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆68Jun 30, 2026Updated 4 months ago
- R package for analysing diversity dynamics with fossil occurrences☆12Dec 1, 2025Updated 11 months ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 6 years ago
- ☆28Sep 18, 2026Updated last month
- Annex Done Right: Spec Ops (TEHGAM 1)☆10Apr 19, 2019Updated 7 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆30Apr 10, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- https://jimhester.github.io/r-actions-test/☆11Nov 19, 2021Updated 4 years ago
- Analysies of gene expression data using Gene Ontology☆10Sep 3, 2025Updated last year
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28May 14, 2025Updated last year
- Documenting usage and experience with bioinformatic tools☆40Sep 11, 2015Updated 11 years ago
- bridges the log crate and indicatif to stop the progress bars and log lines from mixing up☆14Aug 24, 2024Updated 2 years ago
- ☆13Sep 4, 2025Updated last year
- PoC for a Rust-based extension template for DuckDB based on the Extension C API☆10Nov 15, 2024Updated last year
- DEPRECATED Tools for manipulating cell expression format (CEF) files☆12Oct 10, 2017Updated 9 years ago
- Implementation of seq2seq word-level model using keras☆12Dec 18, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Apr 26, 2020Updated 6 years ago
- Generate bib (.bib) bibliography files on the fly☆11Jan 3, 2020Updated 6 years ago
- ☆10Jan 8, 2018Updated 8 years ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 11 months ago
- A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"☆13Sep 15, 2022Updated 4 years ago
- Python pipeline for analysis of SafeSeqS DNA sequencing data.☆11Apr 2, 2018Updated 8 years ago
- Load balancer for ambiorix and shiny☆10Apr 10, 2022Updated 4 years ago