liulab-dfci / CHIPS
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
☆19Updated 3 years ago
Alternatives and similar repositories for CHIPS:
Users that are interested in CHIPS are comparing it to the libraries listed below
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 10 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated last month
- Transcript quantification import with automatic metadata detection☆67Updated 3 weeks ago
- Differential ATAC-seq toolkit☆27Updated last year
- interactive plots for differential expression analysis☆29Updated this week
- ☆20Updated this week
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- gkmSVM R package☆17Updated 7 years ago
- ☆25Updated 10 months ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 7 years ago
- ☆19Updated 2 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- ☆21Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- Create QC and summary reports for Alevin output☆31Updated 2 months ago
- Code for EpiMap data browser☆14Updated 8 months ago
- Fast FASTQ sample demultiplexing in Rust.☆60Updated this week
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆86Updated 6 months ago