liulab-dfci / CHIPSLinks
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
☆20Updated 4 years ago
Alternatives and similar repositories for CHIPS
Users that are interested in CHIPS are comparing it to the libraries listed below
Sorting:
- interactive plots for differential expression analysis☆34Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 9 months ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Differential ATAC-seq toolkit☆27Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- simplified cellranger for long-read data☆19Updated last month
- A small R package to make sequencing read coverage plots in R.☆39Updated this week
- Calculate and plot distributions of genomic ranges☆26Updated 5 months ago
- Create QC and summary reports for Alevin output☆31Updated 2 months ago
- ☆15Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆27Updated this week
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 3 weeks ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆15Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 9 months ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆28Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last week