liulab-dfci / CHIPS
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
☆20Updated 3 years ago
Alternatives and similar repositories for CHIPS:
Users that are interested in CHIPS are comparing it to the libraries listed below
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- interactive plots for differential expression analysis☆32Updated last month
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated last month
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated 3 months ago
- Transcript quantification import with automatic metadata detection☆68Updated 2 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- ☆26Updated 3 weeks ago
- Differential ATAC-seq toolkit☆27Updated last year
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- R interface to genome annotation files and the UCSC genome browser☆32Updated 3 weeks ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 2 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- gkmSVM R package☆17Updated 7 years ago
- ☆28Updated 4 months ago
- ☆15Updated 2 years ago
- ☆9Updated 6 months ago
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- Annotating principal splice isoforms☆14Updated 6 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆45Updated 3 weeks ago
- ☆21Updated last month