PKU-YuanGroup / TaxDiff

Related projects: ⓘ

• PKU-YuanGroup / ProLLaMA
  A Protein Large Language Model for Multi-Task Protein Language Processing
  ☆125Updated 2 weeks ago
• aim-uofa / FADiff
  [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding
  ☆12Updated 3 weeks ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆84Updated last year
• zhengkangjie / ESM-AA
  ☆53Updated 3 months ago
• bozhenhhu / A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction
  ☆35Updated last year
• aim-uofa / VFN
  [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".
  ☆16Updated 3 weeks ago
• jozhang97 / MutateEverything
  ☆60Updated 2 months ago
• A4Bio / DiffSDS
  Official implementation of the paper "DiffSDS: A Language Diffusion Model for Protein Backbone Inpainting under Geometric Conditions and …
  ☆11Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆89Updated 5 months ago
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆83Updated 11 months ago
• bytedance / HMR
  Learning Harmonic Molecular Representations on Riemannian Manifold, ICLR, 2023
  ☆22Updated last year
• A4Bio / MotifRetro
  The official implementation of the paper "MotifRetro: Exploring the Combinability-Consistency Trade-offs in retrosynthesis via Dynamic Mo…
  ☆10Updated last year
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆46Updated 2 months ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆44Updated 10 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆70Updated 10 months ago
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆31Updated last month
• ai4protein / ProSST
  Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.
  ☆32Updated 3 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆30Updated last week
• BorgwardtLab / PST
  Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
  ☆30Updated 2 months ago
• chao1224 / ProteinDT
  ☆40Updated 2 months ago
• bytedance / dplm
  ☆21Updated last week
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆66Updated last year
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆65Updated 3 months ago
• AlgoMole / GeoBFN
  Implementation for ICLR2024 Oral paper "Unified Generative Modeling of 3D Molecules with Bayesian Flow Networks"
  ☆31Updated 3 months ago
• AlgoMole / MolCRAFT
  Implementation for ICML 2024 paper "MolCRAFT: Structure-Based Drug Design in Continuous Parameter Space"
  ☆59Updated last month
• GRAPH-0 / JODO
  Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation
  ☆37Updated 10 months ago
• jinhojsk515 / spmm
  Multimodal learning for chemical domain, with SMILES and properties.
  ☆27Updated last week
• Heisenburger2020 / Vabs-Net
  Vabs-Net: Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains
  ☆11Updated last week
• ginnm / ProteinPretraining
  Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.
  ☆28Updated last month
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆50Updated 3 months ago