PKU-YuanGroup / TaxDiffLinks
The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"
☆72Updated last year
Alternatives and similar repositories for TaxDiff
Users that are interested in TaxDiff are comparing it to the libraries listed below
Sorting:
- A Protein Large Language Model for Multi-Task Protein Language Processing☆200Updated last month
- [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".☆30Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆95Updated 9 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆98Updated 2 years ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆31Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆120Updated 8 months ago
- ☆42Updated 2 years ago
- [ICLR 2025 Spotlight] Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions☆41Updated 7 months ago
- ☆76Updated 8 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆95Updated 6 months ago
- The first large protein language model trained follows structure instructions.☆87Updated 5 months ago
- [AAAI 2025] CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction☆32Updated 10 months ago
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆71Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆215Updated 3 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆66Updated 8 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- ☆10Updated last year
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated 2 years ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆67Updated last year
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated 2 years ago
- ☆200Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆93Updated 5 months ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆62Updated 5 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆69Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- MSAGPT☆35Updated 11 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆177Updated 2 years ago