biomap-research / xTrimoPGLM
The first 100B protein language model from biomap
β13Updated 2 months ago
Alternatives and similar repositories for xTrimoPGLM
Users that are interested in xTrimoPGLM are comparing it to the libraries listed below
Sorting:
- π Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modβ¦β21Updated 3 weeks ago
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoopβ12Updated 11 months ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Modelsβ15Updated last year
- A standardized protein design benchmark for motif-scaffolding problemsβ58Updated last week
- code for SeqDance/ESMDance, biophysics-informed protein language modelsβ34Updated last month
- β23Updated 7 months ago
- Baseline model for PPB-Affinity benchmark dataβ24Updated 5 months ago
- Code for the paper "Learning to engineer protein flexibility".β17Updated last month
- Structure-conditioned masked language modeling for protein sequence designβ62Updated last year
- β60Updated this week
- Code of βMulti-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sitesββ33Updated 2 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinementβ48Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusionβ58Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.β59Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user exβ¦β42Updated 5 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.β65Updated last month
- Converts AlphaFold distograms into distance matrices and saves them into a number of formatsβ12Updated 2 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.β33Updated 6 months ago
- β66Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-proteiβ¦β42Updated 5 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocolβ31Updated last year
- Generative diverse protein backbones by protein language modelβ31Updated 5 months ago
- BioMiner: A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literatureβ40Updated last week
- Adapting protein language models for structure-conditioned designβ38Updated 9 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.β43Updated 2 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.β27Updated last year
- β13Updated 3 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language modelsβ35Updated this week
- β16Updated 6 months ago
- Implementation of AlphaFold 3 in PyTorch Lightning + Hydraβ34Updated 7 months ago