Alternatives and similar repositories for ProteinMechanicsDiffusionDesign:

Users that are interested in ProteinMechanicsDiffusionDesign are comparing it to the libraries listed below

• lamm-mit / ProteinDiffusionGenerator
  Generative method to design novel proteins using a diffusion model
  ☆44Updated last year
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆35Updated 2 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆31Updated 2 months ago
• clami66 / dgram2dmap
  Converts AlphaFold distograms into distance matrices and saves them into a number of formats
  ☆11Updated 2 years ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆29Updated last month
• bene837 / af2seq
  ☆41Updated 4 months ago
• aqlaboratory / QuickBind
  A Light-Weight And Interpretable Molecular Docking Model
  ☆20Updated 3 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆45Updated this week
• bwicky / oligomer_hallucination
  ☆36Updated last year
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆36Updated last week
• karma211225 / KarmaLoop
  Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop
  ☆11Updated 7 months ago
• sokrypton / af2bind
  ☆46Updated 3 weeks ago
• bzho3923 / CPDiffusion
  ☆19Updated 3 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆33Updated this week
• ELELAB / RosettaDDGPrediction
  ☆58Updated 2 months ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆54Updated 8 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆60Updated last month
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆20Updated 2 weeks ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆54Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆40Updated last month
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆34Updated 5 months ago
• zzhangzzhang / pLMs-interpretability
  ☆26Updated 3 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆14Updated 2 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆36Updated 4 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder
  ☆76Updated last week
• amyxlu / plaid
  Multimodal generation of protein sequence and all-atom structure using latent diffusion, with compositional function and taxonomic prompt…
  ☆63Updated last month
• BioinfoMachineLearning / FlowDock
  Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)
  ☆69Updated last week
• allanchen95 / ESMPair
  Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models
  ☆15Updated last year
• ShenLab / SeqDance
  code for SeqDance, a biophysics-informed protein language model
  ☆21Updated 3 months ago