Alternatives and similar repositories for PEFT-SP

Users that are interested in PEFT-SP are comparing it to the libraries listed below

• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆68Updated last week
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆120Updated last week
• moritzgls / ESM-Effect
  ☆15Updated 9 months ago
• jingbo02 / NovoBench
  [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"
  ☆12Updated last year
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆42Updated last year
• zhengkangjie / ESM-AA
  ☆76Updated 9 months ago
• programmablebio / ptm-mamba
  ☆81Updated 6 months ago
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆78Updated 6 months ago
• fdu-wangfeilab / AntiBinder
  ☆18Updated 8 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆67Updated 3 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆121Updated 9 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆77Updated 2 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆64Updated 3 months ago
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆51Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆111Updated last month
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆43Updated 3 weeks ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆101Updated last week
• Exscientia / abodybuilder3
  ☆71Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆88Updated 5 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆105Updated last month
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• dahjan / DMS_opt
  ☆73Updated 5 years ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆46Updated 11 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated last year
• jiaqingxie / DeepProtein
  Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)
  ☆35Updated 5 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆85Updated 4 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• ruofanjin / AttABseq
  ☆17Updated last year
• zhanghaicang / carbonmatrix_public
  ☆117Updated 5 months ago