Alternatives and similar repositories for PEFT-SP

Users that are interested in PEFT-SP are comparing it to the libraries listed below

• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆68Updated 3 months ago
• programmablebio / ptm-mamba
  ☆80Updated 4 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 7 months ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆40Updated 7 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆74Updated last month
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆52Updated 11 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• jingbo02 / NovoBench
  [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"
  ☆12Updated 10 months ago
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆41Updated last year
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆76Updated 5 months ago
• jsunn-y / CARE
  CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
  ☆37Updated 4 months ago
• moritzgls / ESM-Effect
  ☆15Updated 8 months ago
• zhengkangjie / ESM-AA
  ☆76Updated 8 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆108Updated 2 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆119Updated 7 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆109Updated last year
• fdu-wangfeilab / AntiBinder
  ☆18Updated 7 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆86Updated 4 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆45Updated 10 months ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆96Updated 2 months ago
• jiaqingxie / DeepProtein
  Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)
  ☆34Updated 3 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆103Updated last week
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆71Updated 3 months ago
• bzho3923 / ProtLGN
  ☆32Updated last year
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated last year
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆63Updated 7 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆58Updated last month
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆66Updated 2 months ago