Alternatives and similar repositories for PEFT-SP:

Users that are interested in PEFT-SP are comparing it to the libraries listed below

• ruofanjin / AttABseq
  ☆12Updated last year
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆31Updated last month
• programmablebio / ptm-mamba
  ☆64Updated 2 weeks ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆65Updated 2 months ago
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆35Updated 4 months ago
• WeiLab-Biology / DeepProSite
  ☆32Updated last year
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆37Updated 8 months ago
• YihePang / DisoFLAG
  Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model
  ☆20Updated 8 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆30Updated 6 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆32Updated 4 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆55Updated 3 months ago
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆30Updated 3 months ago
• jsunn-y / CARE
  CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
  ☆34Updated 3 months ago
• jkwang93 / AMP-Designer
  A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery
  ☆28Updated last week
• fdu-wangfeilab / AntiBinder
  ☆12Updated last month
• wukevin / proteinclip
  Contrastive learning harmonizing protein language models and natural language models
  ☆32Updated 10 months ago
• CSUBioGroup / DPFunc
  ☆37Updated 3 weeks ago
• enai4bio / DeepAAI
  DeepAAI
  ☆31Updated 4 months ago
• bzho3923 / ProtLGN
  ☆30Updated 8 months ago
• KailiWang1 / RLBind
  a deep learning architecture for RNA-ligand binding sites prediction
  ☆18Updated last year
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆34Updated 7 months ago
• HICAI-ZJU / PLMeAE
  ☆15Updated 4 months ago
• danny305 / StabilityOracle
  ☆25Updated 10 months ago
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆33Updated 2 weeks ago
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆38Updated 10 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆39Updated last year
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆54Updated last week
• CSUBioGroup / DTIAM
  A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.
  ☆37Updated 2 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated 3 months ago