Alternatives and similar repositories for masif-neosurf

Users that are interested in masif-neosurf are comparing it to the libraries listed below

• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆115Updated last year
• yehlincho / BoltzDesign1
  ☆225Updated 3 months ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆117Updated 8 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆150Updated 2 years ago
• ikalvet / heme_binder_diffusion
  ☆142Updated 4 months ago
• levinthal / Pallatom
  ☆128Updated 6 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated 3 weeks ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆235Updated 4 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆165Updated 2 months ago
• ELELAB / RosettaDDGPrediction
  ☆83Updated 2 weeks ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆110Updated last month
• zhanghaicang / carbonmatrix_public
  ☆118Updated 5 months ago
• schrojunzhang / KarmaDock
  ☆129Updated last year
• jertubiana / ScanNet
  ☆135Updated 5 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 3 months ago
• wengong-jin / DSMBind
  ☆95Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆211Updated 4 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆134Updated 3 years ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆142Updated last year
• carbonsilicon-ai / CarsiDock
  Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…
  ☆102Updated 3 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆72Updated last week
• Valdes-Tresanco-MS / AutoDockTools_py3
  Python3 translation of AutoDockTools
  ☆130Updated last year
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆164Updated last week
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆61Updated 9 months ago
• Kuhlman-Lab / evopro
  ☆92Updated last month
• jamesgleave / DD_protocol
  Official repository for the Deep Docking protocol
  ☆123Updated 2 years ago
• jproney / AF2Rank
  ☆114Updated 3 years ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆164Updated 8 months ago
• CAODH / SurfDock
  SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction
  ☆224Updated 2 months ago