MaSIF-neosurf: surface-based protein design for ternary complexes.
☆177Jun 25, 2026Updated last month
Alternatives and similar repositories for masif-neosurf
Users that are interested in masif-neosurf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆255Sep 29, 2025Updated 10 months ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆300Dec 23, 2025Updated 7 months ago
- In silico directed evolution of peptide binders with AlphaFold☆274Apr 24, 2026Updated 3 months ago
- ☆15Mar 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆258Nov 5, 2025Updated 8 months ago
- ☆608Feb 6, 2025Updated last year
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆141Sep 3, 2025Updated 10 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆535Mar 22, 2026Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 8 months ago
- Code used to mine surfaces.☆35Feb 23, 2025Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆190Oct 7, 2025Updated 9 months ago
- Plausibility checks for generated molecule poses.☆392Mar 7, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆332Oct 6, 2025Updated 9 months ago
- ☆257Feb 12, 2026Updated 5 months ago
- ☆30Aug 8, 2025Updated 11 months ago
- Modelling protein conformational landscape with Alphafold☆61Aug 29, 2025Updated 11 months ago
- Masif seed paper repository☆172Sep 22, 2025Updated 10 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆270Jul 24, 2025Updated last year
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆766Jun 19, 2024Updated 2 years ago
- PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking☆63Mar 30, 2026Updated 3 months ago
- Protein-ligand structure prediction☆241Jul 31, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆151Jul 16, 2025Updated last year
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆226Apr 13, 2026Updated 3 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆78Jul 2, 2025Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- Colab Notebooks covering deep learning tools for biomolecular structure prediction and design☆711Apr 17, 2026Updated 3 months ago
- Inference code for RFdiffusion2☆439Apr 3, 2026Updated 3 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆139Feb 1, 2026Updated 5 months ago
- Public RFDiffusionAA repo☆484Jul 9, 2024Updated 2 years ago
- ☆51Nov 29, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- code for SeqDance/ESMDance, biophysics-informed protein language models☆61Jan 28, 2026Updated 6 months ago
- Diffusion model based protein-ligand flexible docking method☆120Oct 30, 2024Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- AI-powered ab initio biomolecular dynamics simulation☆576Feb 18, 2025Updated last year
- ☆51Jun 15, 2026Updated last month
- Making Protein Design accessible to all via Google Colab!☆925Apr 6, 2026Updated 3 months ago
- ☆814May 18, 2026Updated 2 months ago