Alternatives and similar repositories for PoseBench:

Users that are interested in PoseBench are comparing it to the libraries listed below

• plinder-org / plinder
  Protein Ligand INteraction Dataset and Evaluation Resource
  ☆215Updated last month
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆174Updated 2 weeks ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆110Updated 4 months ago
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆231Updated 10 months ago
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆102Updated 5 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆213Updated 8 months ago
• BioinfoMachineLearning / FlowDock
  Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)
  ☆78Updated this week
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆155Updated last month
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆105Updated this week
• levinthal / Pallatom
  ☆91Updated 5 months ago
• t7morgen / misato-dataset
  ☆199Updated 6 months ago
• schrojunzhang / KarmaDock
  ☆107Updated 7 months ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆187Updated last month
• jamesgleave / DD_protocol
  Official repository for the Deep Docking protocol
  ☆117Updated last year
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆90Updated last month
• wengong-jin / DSMBind
  ☆84Updated 5 months ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆105Updated 3 weeks ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆84Updated last month
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆103Updated last month
• jertubiana / ScanNet
  ☆122Updated last year
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆202Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆68Updated 5 months ago
• maabuu / posebusters
  Plausibility checks for generated molecule poses.
  ☆269Updated this week
• CAODH / SurfDock
  SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction
  ☆158Updated last week
• LPDI-EPFL / DrugFlow
  Multi-domain Distribution Learning for De Novo Drug Design
  ☆58Updated last week
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆150Updated last month
• wengong-jin / abdockgen
  ☆105Updated last year
• openforcefield / protein-ligand-benchmark
  Protein-Ligand Benchmark Dataset for Free Energy Calculations
  ☆169Updated 8 months ago
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆91Updated last month