A Landscape Genomic Analysis Toolkit in R
☆22Nov 18, 2025Updated 4 months ago
Alternatives and similar repositories for algatr
Users that are interested in algatr are comparing it to the libraries listed below
Sorting:
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 5 months ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last month
- Dispersal simulations based on ecological niches☆16Dec 7, 2023Updated 2 years ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 2 months ago
- R package to create packed image mosaics (inspired by https://github.com/qnzhou/Mosaic)☆14Jun 28, 2023Updated 2 years ago
- ☆12Mar 8, 2024Updated 2 years ago
- Introductory lesson to generate range maps for butterfly-host plant interactions and predict distributional shifts using publicly availab…☆18Aug 8, 2024Updated last year
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- An R package for the calculation of taxonomic, phenotypic and phylogenetic metrics across grid cells.☆16Aug 20, 2025Updated 7 months ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 3 years ago
- Teaching Material for a Machine Learning course with Keras and Tensorflow in R☆18May 9, 2025Updated 10 months ago
- Preparation of species occurrences and distribution data for the use in phylogenetic analyses. SpeciesgeocodeR is built for data explorat…☆23Aug 31, 2023Updated 2 years ago
- Forest Fuels from Brown's Transects☆11Dec 14, 2018Updated 7 years ago
- ☆35Dec 28, 2021Updated 4 years ago
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Jul 6, 2022Updated 3 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆44Jul 25, 2025Updated 7 months ago
- Package to plot phylogenies with custom shapes☆24Apr 17, 2024Updated last year
- 📦 R package to compute functional diversity indices efficiently☆40Sep 29, 2025Updated 5 months ago
- Wrapper function for 'inlabru' for modeling species distribution models from disparate datasets.☆27Jan 30, 2026Updated last month
- Tools for Modeling Niches and Distributions of Species☆27Aug 19, 2025Updated 7 months ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- ☆14Updated this week
- small scripts, functions or bits of code for parsing genomic data☆14Sep 24, 2022Updated 3 years ago
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 3 months ago
- Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)☆19May 27, 2024Updated last year
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- ☆45Nov 6, 2022Updated 3 years ago
- Quarto extension for an opinionated letter template with customized letter head☆11Jun 5, 2024Updated last year
- R package to find species interactions from co-occurrence data☆16Feb 27, 2024Updated 2 years ago
- Analysis and visualisation of ecological communities in R☆19Feb 25, 2026Updated 3 weeks ago
- Here we produced an individual tree dataset including tree locations, height, crown area, crown volume, and biomass over the entire New Y…☆16Jan 28, 2023Updated 3 years ago
- ☆24Jan 15, 2026Updated 2 months ago
- Machuruku☆32Jan 20, 2025Updated last year
- An R package to repair broken GIS polygons using the prepair (https://github.com/tudelft3d/prepair) Cpp library - mirror to the Gitlab re…☆12Nov 9, 2022Updated 3 years ago
- R-Ladies Dublin meetups slides and code☆12Feb 15, 2021Updated 5 years ago
- Workshop on Genomics - Genomics Adventure☆47Jan 22, 2026Updated last month
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆18Updated this week