TheWangLab / algatr
A Landscape Genomic Analysis Toolkit in R
☆15Updated last week
Alternatives and similar repositories for algatr:
Users that are interested in algatr are comparing it to the libraries listed below
- Species occurrence dot maps in R☆20Updated 2 years ago
- Machuruku☆30Updated last week
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆61Updated 3 months ago
- R package and web app for spatial visualisation of admixture on a projected map☆41Updated 3 weeks ago
- method for modeling continuous and discrete population genetic structure☆35Updated last year
- An R package for the calculation of taxonomic, phenotypic and phylogenetic metrics across grid cells.☆12Updated 6 months ago
- Access sequences from the 1000 Plant Initiative (1KP)☆13Updated last year
- eDNA metabarcoding pipeline☆31Updated last month
- Phylogenetic penalized likelihood☆47Updated 5 months ago
- ☆26Updated 3 years ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Updated 3 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated last year
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Updated 2 years ago
- the hierfstat package☆24Updated last month
- R Interfaces to Phylogenetic Software☆11Updated 8 months ago
- An R Package to build and simulate coalescent models☆19Updated 9 months ago
- A Python package for landscape genomic simulation☆10Updated 3 months ago
- Tutorial for performing redundancy analysis☆15Updated 4 years ago
- UCE Bioinformatics Pipeline☆15Updated last month
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆18Updated 5 years ago
- Fast and simple simulation-based population genetic inference in R☆27Updated 2 weeks ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 6 months ago
- A program for multimodel inference on speciation and trait evolution☆33Updated 7 years ago
- rtrees: an R package to assemble phylogenetic trees from mega-trees☆32Updated 7 months ago
- Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis☆19Updated last month
- Look Up Guild Information for Fungi in R☆19Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆39Updated 3 months ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆68Updated 8 months ago
- This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…☆13Updated 5 years ago
- Importing and Analysing DArT type snp and silicodart data☆32Updated 4 months ago