marctollis / INF515-Comparative-GenomicsView external linksLinks
Materials for the INF 515: Comparative Genomics course at NAU taught by Prof. Marc Tollis
☆13Apr 3, 2025Updated 10 months ago
Alternatives and similar repositories for INF515-Comparative-Genomics
Users that are interested in INF515-Comparative-Genomics are comparing it to the libraries listed below
Sorting:
- ☆11Dec 12, 2024Updated last year
- ☆12Oct 13, 2023Updated 2 years ago
- R package to run BEAST2☆11Dec 8, 2025Updated 2 months ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆15Sep 2, 2025Updated 5 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 2 months ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 6 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated last year
- ☆21Jan 11, 2024Updated 2 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- ☆24Aug 27, 2025Updated 5 months ago
- ☆23Nov 16, 2025Updated 2 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 2 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Jan 3, 2026Updated last month
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- NSU bioinformatics Python course☆13Sep 24, 2024Updated last year
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 4 months ago
- ☆13Apr 22, 2022Updated 3 years ago
- Molecular convergence detection☆46Updated this week
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- ☆12Mar 11, 2025Updated 11 months ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Mar 24, 2020Updated 5 years ago
- babette is an R package to work with BEAST2☆46Dec 20, 2025Updated last month
- Workshop on Genomics - Genomics Adventure☆46Jan 22, 2026Updated 3 weeks ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- ☆13May 13, 2024Updated last year
- Statistical inference of recent positive selection using IBD segments☆14Sep 23, 2025Updated 4 months ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- A web tool for exploring large maps of molecular interactions☆11Updated this week
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- Functional matrix factorization via Bayesian tensor filtering☆13Oct 1, 2025Updated 4 months ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Jun 10, 2019Updated 6 years ago
- Open source code for AlphaFold.☆12Nov 15, 2025Updated 2 months ago
- ☆10Jan 18, 2023Updated 3 years ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year